fulyvv/pose2sim
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
main
pose2sim/Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_LSTM.xml

416 lines
25 KiB
XML
Raw Permalink Normal View History

Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<?xml version="1.0" encoding="UTF-8" ?>
<OpenSimDocument Version="40000">
LSTM review
2024-01-20 03:03:35 +08:00
<InverseKinematicsTool>
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
All should be good.
2024-02-29 10:10:23 +08:00
<model_file>../S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_LSTM_scaled.osim</model_file>
LSTM review
2024-01-20 03:03:35 +08:00
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<constraint_weight>Inf</constraint_weight>
LSTM review
2024-01-20 03:03:35 +08:00
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<accuracy>1.0000000000000001e-05</accuracy>
LSTM review
2024-01-20 03:03:35 +08:00
<!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
All should be good.
2024-02-29 10:10:23 +08:00
<output_motion_file>../S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_LSTM.mot</output_motion_file>
LSTM review
2024-01-20 03:03:35 +08:00
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
<IKTaskSet>
<objects>
<IKMarkerTask name="C7_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r_shoulder_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="L_shoulder_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r.ASIS_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
<IKMarkerTask name="L.ASIS_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
<IKMarkerTask name="r.PSIS_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
<IKMarkerTask name="L.PSIS_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
<IKMarkerTask name="r_knee_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_mknee_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_ankle_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_mankle_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_toe_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_5meta_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_calc_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>60</weight>
</IKMarkerTask>
<IKMarkerTask name="L_knee_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="L_mknee_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="L_ankle_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="L_mankle_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="L_toe_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="L_calc_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>60</weight>
</IKMarkerTask>
<IKMarkerTask name="L_5meta_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>30</weight>
</IKMarkerTask>
<IKMarkerTask name="r_lelbow_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="L_lelbow_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r_melbow_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="L_melbow_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r_lwrist_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="L_lwrist_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r_mwrist_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="L_mwrist_study">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>5</weight>
</IKMarkerTask>
<IKMarkerTask name="r_thigh1_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="r_thigh2_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="r_thigh3_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_thigh1_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_thigh2_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_thigh3_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="r_sh1_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="r_sh2_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="r_sh3_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_sh1_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_sh2_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="L_sh3_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>4</weight>
</IKMarkerTask>
<IKMarkerTask name="RHJC_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
<IKMarkerTask name="LHJC_study">
<!--Whether or not this task will be used during inverse kinematics solve.-->
<apply>true</apply>
<!--Weight given to a marker or coordinate for solving inverse kinematics problems.-->
<weight>25</weight>
</IKMarkerTask>
LSTM with wrist motion (#148) * LSTM with wrist motion * remove tab
2024-11-18 12:24:55 +08:00
<IKMarkerTask name="RThumb">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
<IKMarkerTask name="RIndex">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
<IKMarkerTask name="RPinky">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
<IKMarkerTask name="LThumb">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
<IKMarkerTask name="LIndex">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
<IKMarkerTask name="LPinky">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
</IKMarkerTask>
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<IKCoordinateTask name="sh_tx_l">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_ty_l">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_tz_l">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_axial_rot_l">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.00005</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_tx_r">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_ty_r">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_tz_r">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.001</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
<IKCoordinateTask name="sh_axial_rot_r">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>0.00005</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>manual_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
LSTM review
2024-01-20 03:03:35 +08:00
<IKCoordinateTask name="L5_S1_Flex_Ext">
<!--Whether or not this task will be used during inverse kinematics solve, default is true.-->
<apply>true</apply>
<!--Weight given to the task when solving inverse kinematics problems, default is 0.-->
<weight>1</weight>
<!--Indicates the source of the coordinate value for this task. Possible values are default_value (use default value of coordinate, as specified in the model file, as the fixed target value), manual_value (use the value specified in the value property of this task as the fixed target value), or from_file (use the coordinate values from the coordinate data specified by the coordinates_file property).-->
<value_type>default_value</value_type>
<!--This value will be used as the desired (or prescribed) coordinate value if value_type is set to manual_value.-->
<value>0</value>
</IKCoordinateTask>
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
</objects>
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
All should be good.
2024-02-29 10:10:23 +08:00
<marker_file>../S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_0-100_filt_butterworth_LSTM.trc</marker_file>
Add opensimpipeline for augmenter
2024-01-11 08:12:56 +08:00
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->
<report_marker_locations>false</report_marker_locations>
</InverseKinematicsTool>
</OpenSimDocument>
Reference in New Issue Copy Permalink