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davidpagnon 2024-02-09 12:36:41 +01:00
parent 449ce87fb7
commit 1f9a179758
20 changed files with 54 additions and 54 deletions
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Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Blazepose.xml
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<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Blazepose_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Blazepose_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_blazepose.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_blazepose.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -182,7 +182,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Body135.xml
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<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body135.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body135.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -194,7 +194,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

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Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Body25.xml
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@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -158,7 +158,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

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Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Body25b.xml
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@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25b_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25b_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25b.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25b.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -158,7 +158,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

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Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Coco133.xml
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@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco133_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco133_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco133.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco133.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -194,7 +194,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Coco18.xml
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@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -116,7 +116,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Halpe26.xml
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@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_halpe26_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_halpe26_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe26.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe26.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -164,7 +164,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_Halpe68_136.xml
View File

@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe68_136.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe68_136.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -200,7 +200,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/IK_Setup_Pose2Sim_LSTM.xml
View File

@ -4,7 +4,7 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.--> <!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory> <results_directory>./</results_directory>
<!--Name/path to the xml .osim file.--> <!--Name/path to the xml .osim file.-->
<model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_LSTM_scaled.osim</model_file> <model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_LSTM_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.--> <!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight> <constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.--> <!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
@ -12,7 +12,7 @@
<!--The time range for the study.--> <!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range> <time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.--> <!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_LSTM.mot</output_motion_file> <output_motion_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_LSTM.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.--> <!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors> <report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.--> <!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -370,7 +370,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.--> <!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_LSTM.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_LSTM.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. --> <!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.--> <!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Blazepose.xml
View File

@ -379,7 +379,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 0.416667</time_range> <time_range> 0.0166667 0.416667</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -450,7 +450,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -458,7 +458,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_blazepose_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_blazepose_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Body135.xml
View File

@ -384,7 +384,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 0.1</time_range> <time_range> 0.0166667 0.1</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -581,7 +581,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -589,7 +589,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Body25.xml
View File

@ -379,7 +379,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 2.5</time_range> <time_range> 0.0166667 2.5</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -576,7 +576,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -584,7 +584,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Body25b.xml
View File

@ -384,7 +384,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166663666666666666 0.4166666666666667 </time_range> <time_range> 0.0166663666666666666 0.4166666666666667 </time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -581,7 +581,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -589,7 +589,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25b_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25b_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Coco133.xml
View File

@ -384,7 +384,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 0.1</time_range> <time_range> 0.0166667 0.1</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -581,7 +581,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -589,7 +589,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco133_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco133_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Coco18.xml
View File

@ -331,7 +331,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 2.5</time_range> <time_range> 0.0166667 2.5</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -486,7 +486,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -494,7 +494,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Halpe26.xml
View File

@ -384,7 +384,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 0.1</time_range> <time_range> 0.0166667 0.1</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -587,7 +587,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -595,7 +595,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe26_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe26_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_Halpe68_136.xml
View File

@ -384,7 +384,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 0.1</time_range> <time_range> 0.0166667 0.1</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -587,7 +587,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -595,7 +595,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/OpenSim_Setup/Scaling_Setup_Pose2Sim_LSTM.xml
View File

@ -426,7 +426,7 @@
<groups /> <groups />
</ScaleSet> </ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.--> <!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_filt_butterworth_0-12_LSTM.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_filt_butterworth_0-12_LSTM.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.--> <!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166663666666666666 0.4166666666666667 </time_range> <time_range> 0.0166663666666666666 0.4166666666666667 </time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.--> <!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -671,7 +671,7 @@
<groups /> <groups />
</IKTaskSet> </IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).--> <!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_filt_butterworth_0-12_LSTM.trc</marker_file> <marker_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_filt_butterworth_0-12_LSTM.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. --> <!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file> <coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.--> <!--Time range over which the marker positions are averaged.-->
@ -679,7 +679,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).--> <!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file> <output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.--> <!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>../DEMO/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_LSTM_scaled.osim</output_model_file> <output_model_file>../Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_LSTM_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.--> <!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file> <output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.--> <!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->