upgrade pandas & no support for python>3.8

.github/workflows/continuous-integration.yml

@@ -1,7 +1,7 @@
 # This workflow will install Python dependencies, run tests and lint on several OS with a several versions of Python
 # See: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
 
-name: Build on Win-MacOS-Ubuntu with Python 3.7-3.11
+name: Build on Win-MacOS-Ubuntu with Python 3.8-3.12
 
 on:
   push:
@@ -23,7 +23,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: [3.7, 3.8, 3.9, "3.10", "3.11"]
+        python-version: [3.8, 3.9, "3.10", "3.11", "3.12"]
         include:
           - os: ubuntu-latest
             path: ~/.cache/pip

Pose2Sim/Utilities/Blazepose_runsave.py

@@ -77,7 +77,7 @@ def save_to_csv_or_h5(kpt_list, output_folder, video_name, to_csv, to_h5):
 
     if to_csv:
         csv_file = os.path.join(output_folder, video_name+'.csv')
-        df.to_csv(csv_file, sep=',', index=True, line_terminator='\n')
+        df.to_csv(csv_file, sep=',', index=True, lineterminator='\n')
 
     if to_h5:
         h5_file = os.path.join(output_folder, video_name+'.h5')

Pose2Sim/Utilities/trc_Zup_to_Yup.py

@@ -73,7 +73,7 @@ def trc_Zup_to_Yup_func(*args):
         [trc_o.write(line) for line in header]
         Q_Yup.insert(0, 'Frame#', frames_col)
         Q_Yup.insert(1, 'Time', time_col)
-        Q_Yup.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
+        Q_Yup.to_csv(trc_o, sep='\t', index=False, header=None, lineterminator='\n')
     
 if __name__ == '__main__':
     parser = argparse.ArgumentParser()

Pose2Sim/Utilities/trc_combine.py

@@ -121,7 +121,7 @@ def trc_from_header_data(Header, Data, combined_path):
 
     with open(combined_path, 'w') as trc_o:
         trc_o.write(header_trc+'\n')
-        Data.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
+        Data.to_csv(trc_o, sep='\t', index=False, header=None, lineterminator='\n')
         
 
 def trc_combine_func(*args):

Pose2Sim/Utilities/trc_desample.py

@@ -74,7 +74,7 @@ def trc_desample_func(*args):
     # write trc
     with open(trc_desampled_path, 'w') as trc_o:
         [trc_o.write(line) for line in header]
-        Q.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
+        Q.to_csv(trc_o, sep='\t', index=False, header=None, lineterminator='\n')
     
 
 if __name__ == '__main__':

Pose2Sim/Utilities/trc_filter.py

@@ -340,7 +340,7 @@ def trc_filter_func(**args):
         [trc_o.write(line) for line in header]
         Q_filt.insert(0, 'Frame#', frames_col)
         Q_filt.insert(1, 'Time', time_col)
-        Q_filt.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
+        Q_filt.to_csv(trc_o, sep='\t', index=False, header=None, lineterminator='\n')
 
 
 if __name__ == '__main__':

Pose2Sim/filtering.py

@@ -496,7 +496,7 @@ def filter_all(config):
         [trc_o.write(line) for line in header]
         Q_filt.insert(0, 'Frame#', frames_col)
         Q_filt.insert(1, 'Time', time_col)
-        Q_filt.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
+        Q_filt.to_csv(trc_o, sep='\t', index=False, header=None, lineterminator='\n')
 
     # Recap
     recap_filter3d(config, trc_path_out)

Pose2Sim/triangulation.py

@@ -170,7 +170,7 @@ def make_trc(config, Q, keypoints_names, f_range):
     trc_path = os.path.join(pose3d_dir, trc_f)
     with open(trc_path, 'w') as trc_o:
         [trc_o.write(line+'\n') for line in header_trc]
-        Q.to_csv(trc_o, sep='\t', index=True, header=None, line_terminator='\n')
+        Q.to_csv(trc_o, sep='\t', index=True, header=None, lineterminator='\n')
 
     return trc_path
 

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = pose2sim
-version = 0.4.6
+version = 0.4.7
 author = David Pagnon
 author_email = contact@david-pagnon.com
 description = Perform a markerless kinematic analysis from multiple calibrated views as a unified workflow from an OpenPose input to an OpenSim result.
@@ -41,7 +41,7 @@ install_requires =
     PyQt5
     tqdm
     anytree
-    pandas<1.5
+    pandas>=1.5
     scipy
     statsmodels
     filterpy