Merge pull request #62 from rlagnsals/Separated_augment

Separated augment
2024-01-18 16:51:25 +01:00 · 2024-01-18 16:51:25 +01:00 · 91cda1c1f9
commit 91cda1c1f9
parent 500402ca19 3db4541f4a
180 changed files with 31588 additions and 297 deletions
--- a/.github/workflows/continuous-integration.yml
+++ b/.github/workflows/continuous-integration.yml
@ -55,5 +55,5 @@ jobs:
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
      - name: Test with pytest
        run: |
-          cd Pose2Sim/Demo
+          cd Pose2Sim/Demo/S00_Demo_Session
          pytest -v test.py
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/bofoot.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/bofoot.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/capitate_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/capitate_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/capitate_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/capitate_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv1sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv1sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv2sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv2sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv3sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv3sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv4sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv4sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv5sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv5sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv6sm.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv6sm.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv7.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/cerv7.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/femur_l.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/femur_l.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/femur_r.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/femur_r.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/fibula_l.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/fibula_l.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/fibula_r.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/fibula_r.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/foot.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/foot.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/hamate_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/hamate_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/hamate_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/hamate_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_jaw.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_jaw.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_ribs_scap.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_ribs_scap.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_skull.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/hat_skull.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/humerus_lv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/humerus_lv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/humerus_rv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/humerus_rv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_distal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_distal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_distal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_distal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_medial_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_medial_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_medial_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_medial_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_proximal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_proximal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_proximal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/index_proximal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_bofoot.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_bofoot.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_foot.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_foot.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_patella.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_patella.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_pelvis.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/l_pelvis.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_distal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_distal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_distal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_distal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_medial_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_medial_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_medial_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_medial_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_proximal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_proximal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_proximal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/little_proximal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar1.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar1.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar2.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar2.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar3.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar3.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar4.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar4.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar5.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lumbar5.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lunate_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lunate_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/lunate_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/lunate_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal1_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal1_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal1_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal1_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal2_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal2_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal2_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal2_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal3_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal3_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal3_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal3_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal4_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal4_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal4_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal4_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal5_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal5_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal5_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/metacarpal5_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_distal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_distal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_distal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_distal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_medial_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_medial_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_medial_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_medial_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_proximal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_proximal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_proximal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/middle_proximal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/pisiform_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/pisiform_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/pisiform_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/pisiform_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/r_patella.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/r_patella.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/r_pelvis.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/r_pelvis.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/radius_lv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/radius_lv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/radius_rv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/radius_rv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_distal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_distal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_distal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_distal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_medial_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_medial_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_medial_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_medial_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_proximal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_proximal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_proximal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/ring_proximal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/sacrum.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/sacrum.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/scaphoid_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/scaphoid_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/scaphoid_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/scaphoid_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/talus_lv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/talus_lv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/talus_rv.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/talus_rv.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic10_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic10_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic11_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic11_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic12_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic12_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic1_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic1_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic2_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic2_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic3_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic3_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic4_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic4_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic5_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic5_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic6_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic6_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic7_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic7_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic8_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic8_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic9_s.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thoracic9_s.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_distal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_distal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_distal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_distal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_proximal_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_proximal_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_proximal_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/thumb_proximal_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/tibia_l.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/tibia_l.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/tibia_r.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/tibia_r.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezium_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezium_lvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezium_rvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezium_rvs.vtp
--- a/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezoid_lvs.vtp
+++ b/Pose2Sim/Demo/OpenSim_Setup/Geometry/trapezoid_lvs.vtp
--- a/Show More
+++ b/Show More