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trc generation okay if activations in mot files

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davidpagnon 2023-10-07 10:30:17 +02:00
parent 766a3e1798
commit 9ae8e357f4
2 changed files with 2 additions and 1 deletions
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Pose2Sim/Empty_project/opensim/Model_Pose2Sim_Body25b_full.osim → Pose2Sim/Empty_project/opensim/Model_Pose2Sim_Body25b_contacts_muscles.osim
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Pose2Sim/Utilities/trc_from_mot_osim.py
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@ -57,7 +57,8 @@ def get_marker_positions(motion_data, model):
# Data
times = motion_data.getIndependentColumn()
joint_angle_set_names = motion_data.getColumnLabels() # or [c.getName() for c in model.getCoordinateSet()]
motion_data_pd = pd.DataFrame(motion_data.getMatrix().to_numpy(), columns=joint_angle_set_names)
joint_angle_set_names = [j for j in joint_angle_set_names if not j.endswith('activation')]
motion_data_pd = pd.DataFrame(motion_data.getMatrix().to_numpy()[:,:len(joint_angle_set_names)], columns=joint_angle_set_names)
# Get marker positions at each state
state = model.initSystem()