diff --git a/Pose2Sim/Demo/S00_Demo_Session/test.py b/Pose2Sim/Demo/S00_Demo_Session/test.py deleted file mode 100644 index ce2ba89..0000000 --- a/Pose2Sim/Demo/S00_Demo_Session/test.py +++ /dev/null @@ -1,40 +0,0 @@ -import os -import toml - -def test_workflow(): - - from Pose2Sim import Pose2Sim - - - # Calibration - config_dict = toml.load('Config.toml') - config_dict.get("project").update({"project_dir":"."}) - Pose2Sim.calibration(config_dict) - - - # Static trial - project_dir = os.path.join("S00_P00_SingleParticipant","S00_P00_T00_StaticTrial") - config_dict.get("project").update({"project_dir":project_dir}) - config_dict['filtering']['display_figures'] = False - - # Pose2Sim.poseEstimation(config_dict) - # Pose2Sim.synchronization(config_dict) - Pose2Sim.personAssociation(config_dict) - Pose2Sim.triangulation(config_dict) - Pose2Sim.filtering(config_dict) - Pose2Sim.markerAugmentation(config_dict) - # Pose2Sim.kinematics(config_dict) - - - # Balancing trial - project_dir = os.path.join("S00_P00_SingleParticipant","S00_P00_T01_BalancingTrial") - config_dict.get("project").update({"project_dir":project_dir}) - config_dict['filtering']['display_figures'] = False - - # Pose2Sim.poseEstimation(config_dict) - # Pose2Sim.synchronization(config_dict) - Pose2Sim.personAssociation(config_dict) - Pose2Sim.triangulation(config_dict) - Pose2Sim.filtering(config_dict) - Pose2Sim.markerAugmentation(config_dict) - # Pose2Sim.kinematics(config_dict) diff --git a/Pose2Sim/Demo/S01_Empty_Session/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/Config.toml deleted file mode 100644 index 054e2e6..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -[project] -frame_rate = 60 # fps -frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -# Take heart, calibration is not that complicated once you get the hang of it! - - -[calibration] -calibration_type = 'convert' # 'convert' or 'calculate' - - [calibration.convert] - convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', 'biocv', 'anipose', or 'freemocap' - [calibration.convert.qualisys] - binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - [calibration.convert.optitrack] # See readme for instructions - [calibration.convert.vicon] # No parameter needed - [calibration.convert.opencap] # No parameter needed - [calibration.convert.easymocap] # No parameter needed - [calibration.convert.biocv] # No parameter needed - [calibration.convert.anipose] # No parameter needed - [calibration.convert.freemocap] # No parameter needed - - - [calibration.calculate] - # Camera properties, theoretically need to be calculated only once in a camera lifetime - [calibration.calculate.intrinsics] - overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - show_detection_intrinsics = true # true or false (lowercase) - intrinsics_extension = 'jpg' # any video or image extension - extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - intrinsics_corners_nb = [4,7] - intrinsics_square_size = 60 # mm - - # Camera placements, need to be done before every session - [calibration.calculate.extrinsics] - calculate_extrinsics = true # true or false (lowercase) - extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - # 'board' should be large enough to be detected when laid on the floor. Not recommended. - # 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - # 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - moving_cameras = false # Not implemented yet - - [calibration.calculate.extrinsics.board] - show_reprojection_error = true # true or false (lowercase) - extrinsics_extension = 'png' # any video or image extension - extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - [calibration.calculate.extrinsics.scene] - show_reprojection_error = true # true or false (lowercase) - extrinsics_extension = 'png' # any video or image extension - # list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - # in m -> unlike for intrinsics, NOT in mm! - object_coords_3d = [[-2.0, 0.3, 0.0], - [-2.0 , 0.0, 0.0], - [-2.0, 0.0, 0.05], - [-2.0, -0.3 , 0.0], - [0.0, 0.3, 0.0], - [0.0, 0.0, 0.0], - [0.0, 0.0, 0.05], - [0.0, -0.3, 0.0]] - - [calibration.calculate.extrinsics.keypoints] - # Coming soon! - - -[pose] -pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII - #With mediapipe: BLAZEPOSE. - #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. - #With deeplabcut: CUSTOM. See example at the end of the file. -# What follows has not been implemented yet -overwrite_pose = false -openpose_path = '' # only checked if OpenPose is used - - -[synchronization] -# COMING SOON! -reset_sync = true # Recalculate synchronization even if already done -frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -# Vertical speeds (on X, Y, or Z axis, or 2D speeds) -speed_kind = 'y' # 'x', 'y', 'z', or '2D' -vmax = 20 # px/s -cam1_nb = 4 -cam2_nb = 3 -id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -[personAssociation] -single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -# and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -reproj_error_threshold_association = 20 # px -likelihood_threshold_association = 0.2 - - -[triangulation] -reproj_error_threshold_triangulation = 15 # px -likelihood_threshold_triangulation = 0.3 -min_cameras_for_triangulation = 2 -interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none - # 'none' if you don't want to interpolate missing points -interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -[filtering] -type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -display_figures = true # true or false (lowercase) - - [filtering.butterworth] - order = 4 - cut_off_frequency = 6 # Hz - [filtering.kalman] - # How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - smooth = true # should be true, unless you need real-time filtering - [filtering.butterworth_on_speed] - order = 4 - cut_off_frequency = 10 # Hz - [filtering.gaussian] - sigma_kernel = 2 #px - [filtering.LOESS] - nb_values_used = 30 # = fraction of data used * nb frames - [filtering.median] - kernel_size = 9 - - -[markerAugmentation] -## Only works on BODY_25 and BODY_25B models -participant_height = 1.7 # m -participant_mass = 70 # kg - - -[opensim] -static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -opensim_bin_path = 'C:\OpenSim 4.4\bin' - - - -# CUSTOM skeleton, if you trained your own DeepLabCut model for example. -# Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -# -# If you want to perform inverse kinematics, you will also need to create an OpenSim model -# and add to its markerset the location where you expect the triangulated keypoints to be detected. -# -# In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -# You can create as many custom skeletons as you want, just add them further down and rename them. -# -# Check your model hierarchy with: for pre, _, node in RenderTree(model): -# print(f'{pre}{node.name} id={node.id}') -[pose.CUSTOM] -name = "CHip" -id = "None" - [[pose.CUSTOM.children]] - id = 12 - name = "RHip" - [[pose.CUSTOM.children.children]] - id = 14 - name = "RKnee" - [[pose.CUSTOM.children.children.children]] - id = 16 - name = "RAnkle" - [[pose.CUSTOM.children.children.children.children]] - id = 22 - name = "RBigToe" - [[pose.CUSTOM.children.children.children.children.children]] - id = 23 - name = "RSmallToe" - [[pose.CUSTOM.children.children.children.children]] - id = 24 - name = "RHeel" - [[pose.CUSTOM.children]] - id = 11 - name = "LHip" - [[pose.CUSTOM.children.children]] - id = 13 - name = "LKnee" - [[pose.CUSTOM.children.children.children]] - id = 15 - name = "LAnkle" - [[pose.CUSTOM.children.children.children.children]] - id = 19 - name = "LBigToe" - [[pose.CUSTOM.children.children.children.children.children]] - id = 20 - name = "LSmallToe" - [[pose.CUSTOM.children.children.children.children]] - id = 21 - name = "LHeel" - [[pose.CUSTOM.children]] - id = 17 - name = "Neck" - [[pose.CUSTOM.children.children]] - id = 18 - name = "Head" - [[pose.CUSTOM.children.children.children]] - id = 0 - name = "Nose" - [[pose.CUSTOM.children.children]] - id = 6 - name = "RShoulder" - [[pose.CUSTOM.children.children.children]] - id = 8 - name = "RElbow" - [[pose.CUSTOM.children.children.children.children]] - id = 10 - name = "RWrist" - [[pose.CUSTOM.children.children]] - id = 5 - name = "LShoulder" - [[pose.CUSTOM.children.children.children]] - id = 7 - name = "LElbow" - [[pose.CUSTOM.children.children.children.children]] - id = 9 - name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam02_img/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam02_img/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam03_img/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam03_img/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam01_img/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam01_img/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam02_img/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam02_img/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam03_img/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/intrinsics/int_cam03_img/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_OpenSim/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_OpenSim/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam01_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam01_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam02_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam02_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam03_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/pose/pose_cam03_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam01/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam01/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam02/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam02/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam03/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/videos/video_cam03/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam01_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam01_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam02_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam02_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam03_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/pose/pose_cam03_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam01/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam01/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam02/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam02/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam03/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T01_MotionTrial1/videos/video_cam03/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam01_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam01_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam02_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam02_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam03_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/pose/pose_cam03_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam01/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam01/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam02/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam02/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam03/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T02_MotionTrial2/videos/video_cam03/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_OpenSim/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_OpenSim/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam1_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam1_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam2_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam2_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam3_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/pose/pose_cam3_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam1/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam1/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam2/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam2/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam3/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T00_StaticTrial/videos/video_cam3/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam1_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam1_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam2_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam2_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam3_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/pose/pose_cam3_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam1/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam1/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam2/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam2/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam3/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T01_MotionTrial1/videos/video_cam3/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/Config.toml b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/Config.toml deleted file mode 100644 index c31ef68..0000000 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/Config.toml +++ /dev/null @@ -1,250 +0,0 @@ -############################################################################### -## PROJECT PARAMETERS ## -############################################################################### - - -# Configure your project parameters here. -# -# IMPORTANT: -# If a parameter is not found here, Pose2Sim will look for its value in the -# Config.toml file of the level above. This way, you can set global -# instructions for the Session and alter them for specific Participants or Trials. -# -# If you wish to overwrite a parameter for a specific trial or participant, -# edit its Config.toml file by uncommenting its key (e.g., [project]) -# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment -# [filtering.butterworth] and set cut_off_frequency = 10, etc. - - - -# [project] -# frame_rate = 60 # FPS -# frame_range = [] # For example [10,300], or [] for all frames -## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate -## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, -## frame_range = [0.1, 2.0]*frame_rate = [6, 120] - -# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. -# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] -## Take heart, calibration is not that complicated once you get the hang of it! - - -# [calibration] -# calibration_type = 'convert' # 'convert' or 'calculate' - - # [calibration.convert] - # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' - # [calibration.convert.qualisys] - # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 - # [calibration.convert.optitrack] # See readme for instructions - # [calibration.convert.vicon] # No parameter needed - # [calibration.convert.opencap] # No parameter needed - # [calibration.convert.easymocap] # No parameter needed - # [calibration.convert.biocv] # No parameter needed - # [calibration.convert.anipose] # No parameter needed - # [calibration.convert.freemocap] # No parameter needed - - - # [calibration.calculate] - ## Camera properties, theoretically need to be calculated only once in a camera lifetime - # [calibration.calculate.intrinsics] - # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? - # show_detection_intrinsics = true # true or false (lowercase) - # intrinsics_extension = 'jpg' # any video or image extension - # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) - # intrinsics_corners_nb = [4,7] - # intrinsics_square_size = 60 # mm - - ## Camera placements, need to be done before every session - # [calibration.calculate.extrinsics] - # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' - ## 'board' should be large enough to be detected when laid on the floor. Not recommended. - ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. - ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. - - # moving_cameras = false # Not implemented yet - # calculate_extrinsics = true # true or false (lowercase) - - # [calibration.calculate.extrinsics.board] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] - # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle - - # [calibration.calculate.extrinsics.scene] - # show_reprojection_error = true # true or false (lowercase) - # extrinsics_extension = 'png' # any video or image extension - ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. - ## in m -> unlike for intrinsics, NOT in mm! - # object_coords_3d = [[-2.0, 0.3, 0.0], - # [-2.0 , 0.0, 0.0], - # [-2.0, 0.0, 0.05], - # [-2.0, -0.3 , 0.0], - # [0.0, 0.3, 0.0], - # [0.0, 0.0, 0.0], - # [0.0, 0.0, 0.05], - # [0.0, -0.3, 0.0]] - - # [calibration.calculate.extrinsics.keypoints] - ## Coming soon! - - -# [pose] -# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' -# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, -# #With mediapipe: BLAZEPOSE. -# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. -# #With deeplabcut: CUSTOM. See example at the end of the file. -## What follows has not been implemented yet -# overwrite_pose = false -# openpose_path = '' # only checked if OpenPose is used - - -# [synchronization] -## COMING SOON! -# reset_sync = true # Recalculate synchronization even if already done -# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. -# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter -## Vertical speeds (on X, Y, or Z axis, or 2D speeds) -# speed_kind = 'y' # 'x', 'y', 'z', or '2D' -# vmax = 20 # px/s -# cam1_nb = 4 -# cam2_nb = 3 -# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 -# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints - - -# [personAssociation] -# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. -# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py -## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) -# reproj_error_threshold_association = 20 # px -# likelihood_threshold_association = 0.2 - - -# [triangulation] -# reproj_error_threshold_triangulation = 15 # px -# likelihood_threshold_triangulation = 0.3 -# min_cameras_for_triangulation = 2 -# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none -## 'none' if you don't want to interpolate missing points -# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps -# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated -# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower -# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low -# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! - - -# [filtering] -# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) - - # [filtering.butterworth] - # order = 4 - # cut_off_frequency = 6 # Hz - # [filtering.kalman] - ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? - # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise - # smooth = true # should be true, unless you need real-time filtering - # [filtering.butterworth_on_speed] - # order = 4 - # cut_off_frequency = 10 # Hz - # [filtering.gaussian] - # sigma_kernel = 2 #px - # [filtering.LOESS] - # nb_values_used = 30 # = fraction of data used * nb frames - # [filtering.median] - # kernel_size = 9 - - -# [markerAugmentation] -# ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg - - -# [opensim] -# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] -# # If this Config.toml file is at the Trial level, set to true or false (lowercase); -# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; -# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] -# opensim_bin_path = 'C:\OpenSim 4.4\bin' - - -## CUSTOM skeleton, if you trained your own DeepLabCut model for example. -## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. -## -## If you want to perform inverse kinematics, you will also need to create an OpenSim model -## and add to its markerset the location where you expect the triangulated keypoints to be detected. -## -## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). -## You can create as many custom skeletons as you want, just add them further down and rename them. -## -## Check your model hierarchy with: for pre, _, node in RenderTree(model): -## print(f'{pre}{node.name} id={node.id}') -# [pose.CUSTOM] -# name = "CHip" -# id = "None" -# [[pose.CUSTOM.children]] -# id = 12 -# name = "RHip" -# [[pose.CUSTOM.children.children]] -# id = 14 -# name = "RKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 16 -# name = "RAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 22 -# name = "RBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 23 -# name = "RSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 24 -# name = "RHeel" -# [[pose.CUSTOM.children]] -# id = 11 -# name = "LHip" -# [[pose.CUSTOM.children.children]] -# id = 13 -# name = "LKnee" -# [[pose.CUSTOM.children.children.children]] -# id = 15 -# name = "LAnkle" -# [[pose.CUSTOM.children.children.children.children]] -# id = 19 -# name = "LBigToe" -# [[pose.CUSTOM.children.children.children.children.children]] -# id = 20 -# name = "LSmallToe" -# [[pose.CUSTOM.children.children.children.children]] -# id = 21 -# name = "LHeel" -# [[pose.CUSTOM.children]] -# id = 17 -# name = "Neck" -# [[pose.CUSTOM.children.children]] -# id = 18 -# name = "Head" -# [[pose.CUSTOM.children.children.children]] -# id = 0 -# name = "Nose" -# [[pose.CUSTOM.children.children]] -# id = 6 -# name = "RShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 8 -# name = "RElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 10 -# name = "RWrist" -# [[pose.CUSTOM.children.children]] -# id = 5 -# name = "LShoulder" -# [[pose.CUSTOM.children.children.children]] -# id = 7 -# name = "LElbow" -# [[pose.CUSTOM.children.children.children.children]] -# id = 9 -# name = "LWrist" diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam1_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam1_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam2_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam2_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam3_json/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/pose/pose_cam3_json/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam1/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam1/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam2/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam2/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam3/.gitkeep b/Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant01/S01_P01_T02_MotionTrial2/videos/video_cam3/.gitkeep deleted file mode 100644 index e69de29..0000000 diff --git a/Pose2Sim/Demo/S00_Demo_Session/Config.toml b/Pose2Sim/S00_Demo_Session/Config.toml similarity index 96% rename from Pose2Sim/Demo/S00_Demo_Session/Config.toml rename to Pose2Sim/S00_Demo_Session/Config.toml index 054e2e6..d71a8f5 100644 --- a/Pose2Sim/Demo/S00_Demo_Session/Config.toml +++ b/Pose2Sim/S00_Demo_Session/Config.toml @@ -18,6 +18,7 @@ [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. frame_rate = 60 # fps frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -122,6 +123,7 @@ likelihood_threshold_association = 0.2 [triangulation] +reorder_trc = false # only checked if multi_person analysis reproj_error_threshold_triangulation = 15 # px likelihood_threshold_triangulation = 0.3 min_cameras_for_triangulation = 2 @@ -136,7 +138,7 @@ make_c3d = false # save triangulated data in c3d format in addition to trc # Com [filtering] type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -display_figures = true # true or false (lowercase) +display_figures = false # true or false (lowercase) [filtering.butterworth] order = 4 @@ -158,8 +160,8 @@ display_figures = true # true or false (lowercase) [markerAugmentation] ## Only works on BODY_25 and BODY_25B models -participant_height = 1.7 # m -participant_mass = 70 # kg +participant_height = 1.72 # m # float if single person, list of float if multi-person (same order as the Static trials) +participant_mass = 70.0 # kg [opensim] diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/Calib.qca.txt b/Pose2Sim/S00_Demo_Session/S00_Calibration/Calib.qca.txt similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/Calib.qca.txt rename to Pose2Sim/S00_Demo_Session/S00_Calibration/Calib.qca.txt diff --git a/Pose2Sim/S00_Demo_Session/S00_Calibration/Calib_qualisys.toml b/Pose2Sim/S00_Demo_Session/S00_Calibration/Calib_qualisys.toml new file mode 100644 index 0000000..5aa32e6 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_Calibration/Calib_qualisys.toml @@ -0,0 +1,39 @@ +[cam_01] +name = "cam_01" +size = [ 1088.0, 1920.0] +matrix = [ [ 1681.244873046875, 0.0, 532.97369384375], [ 0.0, 1681.075439453125, 948.137390140625], [ 0.0, 0.0, 1.0]] +distortions = [ -0.000721609375, 0.002187234375, 9.5e-06, 1.078125e-05] +rotation = [ 1.6882754799999993, 1.0483220499999997, -0.41955852000000016] +translation = [ 0.3211048899999996, 0.9563320600000009, 2.8907130499999996] +fisheye = false + +[cam_02] +name = "cam_02" +size = [ 1088.0, 1920.0] +matrix = [ [ 1673.729614265625, 0.0, 534.494567875], [ 0.0, 1673.79724121875, 963.225891109375], [ 0.0, 0.0, 1.0]] +distortions = [ -0.000747609375, 0.00213728125, 1.51875e-05, 4.546875e-06] +rotation = [ 1.34975875, 1.5963809099999993, -1.1983285799999999] +translation = [ -0.11152829000000014, 0.7766184800000001, 3.0675519599999994] +fisheye = false + +[cam_03] +name = "cam_03" +size = [ 1088.0, 1920.0] +matrix = [ [ 1681.598388671875, 0.0, 513.20837403125], [ 0.0, 1681.509887703125, 955.005126953125], [ 0.0, 0.0, 1.0]] +distortions = [ -0.000729765625, 0.00215034375, -8.46875e-06, -8.078125e-06] +rotation = [ 0.8109654899999995, -2.1972129299999996, 1.3760277799999996] +translation = [ -0.7934803899999995, 0.32283594000000126, 4.353514870000001] +fisheye = false + +[cam_04] +name = "cam_04" +size = [ 1088.0, 1920.0] +matrix = [ [ 1675.234985359375, 0.0, 540.106201171875], [ 0.0, 1675.204223640625, 964.0302734375], [ 0.0, 0.0, 1.0]] +distortions = [ -0.000744265625, 0.002104171875, 4.328125e-06, 3.109375e-06] +rotation = [ 1.4045571699999995, -1.3887412699999993, 0.42535743000000026] +translation = [ 0.5030217200000007, 0.04894934000000107, 4.406564460000002] +fisheye = false + +[metadata] +adjusted = false +error = 0.0 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/extrinsics/ext_cam01_img/.gitkeep b/Pose2Sim/S00_Demo_Session/S00_Calibration/extrinsics/ext_cam01_img/.gitkeep similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/extrinsics/ext_cam01_img/.gitkeep rename to Pose2Sim/S00_Demo_Session/S00_Calibration/extrinsics/ext_cam01_img/.gitkeep diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/extrinsics/ext_cam01_img/cam01_ext.png 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--git a/Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_06_int.jpg b/Pose2Sim/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_06_int.jpg similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_06_int.jpg rename to Pose2Sim/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_06_int.jpg diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_07_int.jpg b/Pose2Sim/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_07_int.jpg similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_07_int.jpg rename to Pose2Sim/S00_Demo_Session/S00_Calibration/intrinsics/int_cam04_img/cam04_07_int.jpg diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml similarity index 96% rename from Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/Config.toml rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml index c31ef68..171e163 100644 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/Config.toml +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml @@ -18,6 +18,7 @@ # [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. # frame_rate = 60 # FPS # frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -26,9 +27,9 @@ # exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. # e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] + + ## Take heart, calibration is not that complicated once you get the hang of it! - - # [calibration] # calibration_type = 'convert' # 'convert' or 'calculate' @@ -123,6 +124,7 @@ # [triangulation] +# reorder_trc = false # only checked if multi_person analysis # reproj_error_threshold_triangulation = 15 # px # likelihood_threshold_triangulation = 0.3 # min_cameras_for_triangulation = 2 @@ -137,7 +139,7 @@ # [filtering] # type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) +# display_figures = false # true or false (lowercase) # [filtering.butterworth] # order = 4 @@ -159,8 +161,8 @@ # [markerAugmentation] # ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg +# participant_height = 1.72 # m # float if single person, list of float if multi-person (same order as the Static trials) +# participant_mass = 70.0 # kg # [opensim] diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/.gitkeep b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/.gitkeep similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/.gitkeep rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_OpenSim/.gitkeep diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml similarity index 96% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml index c31ef68..171e163 100644 --- a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/Config.toml +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml @@ -18,6 +18,7 @@ # [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. # frame_rate = 60 # FPS # frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -26,9 +27,9 @@ # exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. # e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] + + ## Take heart, calibration is not that complicated once you get the hang of it! - - # [calibration] # calibration_type = 'convert' # 'convert' or 'calculate' @@ -123,6 +124,7 @@ # [triangulation] +# reorder_trc = false # only checked if multi_person analysis # reproj_error_threshold_triangulation = 15 # px # likelihood_threshold_triangulation = 0.3 # min_cameras_for_triangulation = 2 @@ -137,7 +139,7 @@ # [filtering] # type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) +# display_figures = false # true or false (lowercase) # [filtering.butterworth] # order = 4 @@ -159,8 +161,8 @@ # [markerAugmentation] # ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg +# participant_height = 1.72 # m # float if single person, list of float if multi-person (same order as the Static trials) +# participant_mass = 70.0 # kg # [opensim] diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc new file mode 100644 index 0000000..f7bd54f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc @@ -0,0 +1,17 @@ +PathFileType 4 (X/Y/Z) S00_P00_T00_StaticTrial_0-12.trc +DataRate CameraRate NumFrames NumMarkers Units OrigDataRate OrigDataStartFrame OrigNumFrames +60 60 12 21 m 60 0 12 +Frame# Time RHip RKnee RAnkle RBigToe RSmallToe RHeel LHip LKnee LAnkle LBigToe LSmallToe LHeel Neck Head Nose RShoulder RElbow RWrist LShoulder LElbow LWrist + X1 Y1 Z1 X2 Y2 Z2 X3 Y3 Z3 X4 Y4 Z4 X5 Y5 Z5 X6 Y6 Z6 X7 Y7 Z7 X8 Y8 Z8 X9 Y9 Z9 X10 Y10 Z10 X11 Y11 Z11 X12 Y12 Z12 X13 Y13 Z13 X14 Y14 Z14 X15 Y15 Z15 X16 Y16 Z16 X17 Y17 Z17 X18 Y18 Z18 X19 Y19 Z19 X20 Y20 Z20 X21 Y21 Z21 +1 0.016666666666666666 -0.0805892909022766 0.8696950332650176 0.07616397712720892 -0.09062396992529709 0.5027125987699389 0.053815664751652004 -0.08348510484278131 0.11873254569531727 0.05652388198749249 0.10932791883931053 0.03344409541682934 0.035747414577025766 0.07248983335710339 0.033062074202217566 0.07875225368890361 -0.1176087936969027 0.047451893916352406 0.046342262659457824 -0.08119480911121874 0.8696061657045612 -0.13493262879782794 -0.09131718923675158 0.5024873911329986 -0.12335261295489082 -0.08442033381266927 0.11837364921705015 -0.13744169250106358 0.10857362727170176 0.03309586754403008 -0.11707336893692377 0.0713043071484326 0.03253248587808669 -0.1605443175932955 -0.11848564079149933 0.047124908972132076 -0.1297639541701532 -0.11433658091277049 1.4866114990895252 -0.023449884506625267 -0.03715305447810592 1.7080697552316921 0.0023489874129097657 -0.007947310066847993 1.5820735921196267 -0.021655869337684177 -0.1254425869499149 1.4065244957439884 0.17755770497265036 -0.08348187441862763 1.1655200498791976 0.30777720913591783 -0.10309240416673056 0.9809612674140524 0.4494034972733397 -0.12592189367116663 1.4071150650397621 -0.22679012550238398 -0.06355728043185781 1.1690645386299587 -0.3607828888380721 -0.06823467675436763 0.9830199237181229 -0.5087828293513995 +2 0.03333333333333333 -0.0805892909022766 0.8696950332650176 0.07616397712720892 -0.09062396992529709 0.5027125987699389 0.053815664751652004 -0.08348510484278131 0.11873254569531727 0.05652388198749249 0.10932791883931053 0.03344409541682934 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Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00008.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00008.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00009.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00009.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00009.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00009.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00010.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00010.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00010.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00010.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00011.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00011.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00011.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam03_json/Static_cam_03.00011.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00000.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00000.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00000.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00000.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00001.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00001.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00001.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00001.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00002.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00002.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00002.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00002.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00003.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00003.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00003.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00003.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00004.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00004.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00004.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00004.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00005.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00005.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00005.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00005.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00006.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00006.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00006.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00006.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00007.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00007.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00007.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00007.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00008.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00008.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00008.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00008.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00009.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00009.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00009.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00009.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00010.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00010.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00010.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00010.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00011.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00011.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00011.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose-associated/cam04_json/Static_cam_04.00011.json diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00000.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00000.json new file mode 100644 index 0000000..a60cd87 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00000.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [1021.3256512174645, 602.3711015713403, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 825.917552286083, 673.152771671459, 1.0, 1035.5833583893284, 774.3395267483642, 1.0, 753.5349065342303, 791.4356972268777, 1.0, 1068.8016718578638, 983.779761832728, 1.0, 666.0449646448034, 861.9695584374556, 1.0, 1095.9258869156356, 1163.4832923847428, 1.0, 786.231065316051, 1024.8628135810081, 1.0, 880.1976062513037, 1091.9310659604416, 1.0, 724.5532829849652, 1227.5775894192202, 1.0, 796.2373537399884, 1290.205792638792, 1.0, 664.2223820043956, 1409.0377529832285, 1.0, 735.7633804072557, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00001.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [1021.3256512174645, 602.3711015713403, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 825.917552286083, 673.152771671459, 1.0, 1035.5833583893284, 774.3395267483642, 1.0, 753.5349065342303, 791.4356972268777, 1.0, 1068.8016718578638, 983.779761832728, 1.0, 666.0449646448034, 861.9695584374556, 1.0, 1095.9258869156356, 1163.4832923847428, 1.0, 786.231065316051, 1024.8628135810081, 1.0, 880.1976062513037, 1091.9310659604416, 1.0, 724.5532829849652, 1227.5775894192202, 1.0, 796.2373537399884, 1290.205792638792, 1.0, 664.2223820043956, 1409.0377529832285, 1.0, 735.7633804072557, 1482.841836684363, 1.0, 948.6387949472169, 665.4060224499005, 1.0, 1032.4754623523174, 509.73432205900895, 1.0, 739.3889893581304, 1429.8440586282695, 1.0, 709.2183877925171, 1419.5531634583926, 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"pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00003.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00003.json new file mode 100644 index 0000000..a60cd87 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00003.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [1021.3256512174645, 602.3711015713403, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 825.917552286083, 673.152771671459, 1.0, 1035.5833583893284, 774.3395267483642, 1.0, 753.5349065342303, 791.4356972268777, 1.0, 1068.8016718578638, 983.779761832728, 1.0, 666.0449646448034, 861.9695584374556, 1.0, 1095.9258869156356, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00004.json new file mode 100644 index 0000000..a60cd87 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam01_json/Static_cam_01.00004.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [1021.3256512174645, 602.3711015713403, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 825.917552286083, 673.152771671459, 1.0, 1035.5833583893284, 774.3395267483642, 1.0, 753.5349065342303, 791.4356972268777, 1.0, 1068.8016718578638, 983.779761832728, 1.0, 666.0449646448034, 861.9695584374556, 1.0, 1095.9258869156356, 1163.4832923847428, 1.0, 786.231065316051, 1024.8628135810081, 1.0, 880.1976062513037, 1091.9310659604416, 1.0, 724.5532829849652, 1227.5775894192202, 1.0, 796.2373537399884, 1290.205792638792, 1.0, 664.2223820043956, 1409.0377529832285, 1.0, 735.7633804072557, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00004.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00004.json new file mode 100644 index 0000000..e1c1406 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00004.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [427.3464900019353, 498.8134856779377, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 395.22335979254365, 596.569436016802, 1.0, 325.05748781202027, 629.0577120017178, 1.0, 454.6593231883056, 718.3762738421328, 1.0, 336.80183729755055, 805.1974595578574, 1.0, 474.1340616974865, 798.4643435027876, 1.0, 302.46706876939027, 953.5960163096411, 1.0, 423.12608210689837, 909.0332532384459, 1.0, 391.6836859327799, 946.0551491450317, 1.0, 426.11381144213703, 1101.6791960738335, 1.0, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00008.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00008.json new file mode 100644 index 0000000..e1c1406 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam02_json/Static_cam_02.00008.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [427.3464900019353, 498.8134856779377, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 395.22335979254365, 596.569436016802, 1.0, 325.05748781202027, 629.0577120017178, 1.0, 454.6593231883056, 718.3762738421328, 1.0, 336.80183729755055, 805.1974595578574, 1.0, 474.1340616974865, 798.4643435027876, 1.0, 302.46706876939027, 953.5960163096411, 1.0, 423.12608210689837, 909.0332532384459, 1.0, 391.6836859327799, 946.0551491450317, 1.0, 426.11381144213703, 1101.6791960738335, 1.0, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00004.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00004.json new file mode 100644 index 0000000..9aad466 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam03_json/Static_cam_03.00004.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [142.7197029219237, 452.1850126836162, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 253.56962836894903, 534.5794176993556, 1.0, 141.4964137335877, 518.3614698915701, 1.0, 281.81621370938285, 656.4462772426227, 1.0, 107.19082467355277, 618.048372563323, 1.0, 335.6002780312737, 750.0448355444595, 1.0, 89.90781217492507, 682.4635147740469, 1.0, 235.65913975498066, 768.0678267236143, 1.0, 179.53382927927382, 752.5715822002817, 1.0, 250.72325369101992, 910.6968507045593, 1.0, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00000.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00000.json new file mode 100644 index 0000000..c5aa7f4 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00000.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [476.9247556439333, 399.4908558946094, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 532.4305118003225, 477.7472567237922, 1.0, 576.409772268334, 432.74662560401225, 1.0, 536.478396760508, 608.2714939540501, 1.0, 613.079695388294, 518.834489239116, 1.0, 556.8331820317502, 709.6303387201369, 1.0, 660.5078601338757, 566.9310134219747, 1.0, 620.8804538022547, 690.8777944022152, 1.0, 639.3342529106104, 659.1655058127772, 1.0, 685.5945925074111, 822.6068332382686, 1.0, 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"face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00011.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00011.json new file mode 100644 index 0000000..c5aa7f4 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/pose/cam04_json/Static_cam_04.00011.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [476.9247556439333, 399.4908558946094, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 532.4305118003225, 477.7472567237922, 1.0, 576.409772268334, 432.74662560401225, 1.0, 536.478396760508, 608.2714939540501, 1.0, 613.079695388294, 518.834489239116, 1.0, 556.8331820317502, 709.6303387201369, 1.0, 660.5078601338757, 566.9310134219747, 1.0, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam01.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam01.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam01.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam02.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam02.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam02.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam02.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam03.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam03.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam03.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam03.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam04.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam04.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam04.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/videos/cam04.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml similarity index 96% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml index 0997e7c..d92fcbb 100644 --- a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T00_StaticTrial/Config.toml +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml @@ -18,6 +18,7 @@ # [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. # frame_rate = 60 # FPS # frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -123,6 +124,7 @@ # [triangulation] +# reorder_trc = false # only checked if multi_person analysis # reproj_error_threshold_triangulation = 15 # px # likelihood_threshold_triangulation = 0.3 # min_cameras_for_triangulation = 2 @@ -137,7 +139,7 @@ [filtering] # type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -display_figures = false # true or false (lowercase) +display_figures = true # true or false (lowercase) # [filtering.butterworth] # order = 4 @@ -159,8 +161,8 @@ display_figures = false # true or false (lowercase) # [markerAugmentation] # ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg +# participant_height = 1.72 # m # float if single person, list of float if multi-person (same order as the Static trials) +# participant_mass = 70.0 # kg # [opensim] diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_0-100.trc b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_0-100.trc new file mode 100644 index 0000000..1b67fbd --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_0-100.trc @@ -0,0 +1,105 @@ +PathFileType 4 (X/Y/Z) S00_P00_T01_BalancingTrial_0-100.trc +DataRate CameraRate NumFrames NumMarkers Units OrigDataRate OrigDataStartFrame OrigNumFrames +60 60 100 21 m 60 0 100 +Frame# Time RHip RKnee RAnkle RBigToe RSmallToe RHeel LHip LKnee LAnkle LBigToe LSmallToe LHeel Neck Head Nose RShoulder RElbow RWrist LShoulder LElbow LWrist + X1 Y1 Z1 X2 Y2 Z2 X3 Y3 Z3 X4 Y4 Z4 X5 Y5 Z5 X6 Y6 Z6 X7 Y7 Z7 X8 Y8 Z8 X9 Y9 Z9 X10 Y10 Z10 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0014.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0014.json new file mode 100644 index 0000000..809832f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0014.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [610.398, 463.215, 0.672647, 631.384, 452.648, 0.644754, 605.126, 442.139, 0.686281, 631.404, 468.386, 0.115936, 568.432, 431.604, 0.669311, 604.994, 562.953, 0.660914, 468.381, 484.167, 0.664068, 599.756, 678.774, 0.648235, 342.261, 526.314, 0.662077, 599.86, 799.591, 0.644453, 316.082, 589.278, 0.665882, 489.401, 773.256, 0.670107, 394.844, 741.762, 0.675619, 457.897, 952.059, 0.670543, 358.145, 920.566, 0.621887, 405.453, 1088.85, 0.660234, 321.179, 994.253, 0.641749, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0016.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0016.json new file mode 100644 index 0000000..35f1d3e --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0016.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [631.405, 478.854, 0.638993, 647.132, 468.352, 0.572119, 620.914, 452.578, 0.63477, 647.175, 473.645, 0.0622508, 584.038, 436.924, 0.648103, 615.573, 568.203, 0.663149, 484.119, 484.143, 0.664613, 605.06, 689.202, 0.668276, 363.22, 520.878, 0.613099, 599.887, 810.202, 0.677804, 342.292, 552.461, 0.569158, 489.464, 778.547, 0.661472, 394.882, 741.824, 0.669056, 457.905, 957.436, 0.653557, 357.966, 931.046, 0.635075, 405.376, 1099.3, 0.659277, 321.199, 999.486, 0.617086, 568.437, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0018.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0018.json new file mode 100644 index 0000000..72d3c29 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0018.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [641.996, 484.122, 0.681276, 657.63, 473.745, 0.639394, 636.705, 457.968, 0.661353, 673.418, 484.203, 0.116898, 599.884, 442.117, 0.670494, 626.092, 573.667, 0.673318, 494.741, 484.227, 0.659783, 610.428, 704.948, 0.677486, 379.043, 515.658, 0.610613, 605.101, 825.997, 0.672281, 363.253, 526.254, 0.591237, 489.53, 778.62, 0.665046, 394.918, 741.757, 0.659248, 463.108, 967.918, 0.662872, 342.277, 931.103, 0.641624, 405.409, 1099.27, 0.667684, 316.027, 1015.2, 0.637565, 584.016, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0020.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0020.json new file mode 100644 index 0000000..d5bf36c --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0020.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [652.387, 494.66, 0.62914, 678.656, 484.207, 0.567312, 647.213, 473.567, 0.625043, 683.892, 494.68, 0.116598, 610.503, 452.57, 0.594763, 636.659, 584.068, 0.624176, 510.55, 489.426, 0.602728, 620.842, 720.699, 0.599006, 389.535, 499.929, 0.485534, 610.291, 852.17, 0.566979, 389.555, 505.221, 0.467232, 489.453, 778.597, 0.616063, 399.987, 736.595, 0.632366, 457.887, 983.575, 0.623347, 331.664, 931.137, 0.580659, 405.339, 1099.36, 0.623241, 310.568, 1030.9, 0.594841, 594.641, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0022.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0022.json new file mode 100644 index 0000000..72a0ea5 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0022.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [662.98, 510.39, 0.671121, 689.137, 499.955, 0.640702, 657.678, 484.087, 0.676648, 689.295, 510.516, 0.108665, 626.183, 463.197, 0.636493, 647.04, 599.75, 0.671828, 520.964, 494.672, 0.662414, 626.1, 736.527, 0.661548, 394.754, 510.49, 0.595495, 610.358, 862.858, 0.682214, 394.675, 473.621, 0.465709, 494.701, 778.71, 0.65498, 400.063, 736.594, 0.664662, 463.114, 983.651, 0.636468, 321.232, 936.24, 0.644034, 405.424, 1099.36, 0.67605, 279.241, 1036.26, 0.642856, 605.181, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0024.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0024.json new file mode 100644 index 0000000..9f3fedb --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0024.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [678.772, 515.737, 0.682683, 694.415, 510.409, 0.677135, 673.423, 489.45, 0.658947, 694.444, 515.725, 0.127299, 636.632, 473.639, 0.645609, 647.195, 605.141, 0.688315, 526.187, 494.759, 0.670639, 631.454, 736.57, 0.66026, 400.143, 515.583, 0.604566, 615.647, 867.936, 0.681574, 400.093, 478.989, 0.536421, 494.665, 783.822, 0.66464, 400.112, 736.575, 0.668094, 468.385, 983.734, 0.63873, 315.924, 925.819, 0.632828, 405.437, 1099.26, 0.664094, 268.524, 1052.07, 0.67118, 610.468, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0026.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0026.json new file mode 100644 index 0000000..aebf953 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0026.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [689.211, 521.036, 0.70502, 699.687, 515.823, 0.642428, 689.097, 500.003, 0.674293, 694.441, 521.031, 0.0805465, 647.229, 478.984, 0.67511, 652.408, 610.415, 0.684888, 541.983, 505.255, 0.656588, 636.627, 741.834, 0.666142, 410.549, 510.374, 0.592616, 620.84, 873.17, 0.69363, 405.393, 473.728, 0.549605, 494.764, 789.104, 0.675341, 400.155, 741.786, 0.681532, 473.635, 988.873, 0.649824, 305.397, 931.122, 0.64973, 410.536, 1099.37, 0.673173, 237.071, 1067.74, 0.698614, 620.957, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0028.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0028.json new file mode 100644 index 0000000..3be239e --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0028.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [694.51, 526.373, 0.695784, 710.292, 521.11, 0.604561, 694.421, 515.609, 0.696696, 0, 0, 0, 657.632, 484.281, 0.665284, 652.574, 615.684, 0.660361, 552.521, 510.532, 0.643129, 641.845, 752.275, 0.64737, 410.602, 505.189, 0.595347, 620.951, 878.433, 0.688953, 415.867, 468.363, 0.535222, 499.907, 799.661, 0.646384, 400.143, 747.074, 0.661142, 473.643, 994.166, 0.65857, 289.701, 931.144, 0.638802, 405.458, 1104.56, 0.654546, 216.129, 1067.83, 0.690419, 631.351, 542.007, 0.662274, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0030.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0030.json new file mode 100644 index 0000000..8d8a3d3 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0030.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [699.795, 542.012, 0.665946, 726.013, 531.482, 0.55999, 699.72, 520.887, 0.690783, 0, 0, 0, 668.242, 494.754, 0.6417, 657.765, 626.162, 0.646929, 562.982, 515.793, 0.660622, 641.817, 757.627, 0.651546, 426.381, 505.139, 0.578033, 626.202, 878.586, 0.686231, 426.297, 452.618, 0.503767, 500.025, 804.861, 0.645941, 405.395, 747.109, 0.655732, 468.482, 999.354, 0.645111, 284.399, 936.226, 0.643249, 405.426, 1109.71, 0.661146, 195.023, 1067.9, 0.66746, 636.708, 557.695, 0.659631, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0064.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0064.json new file mode 100644 index 0000000..eacc2d9 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0064.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [778.558, 626.098, 0.664728, 804.924, 610.516, 0.345076, 778.626, 599.91, 0.651635, 0, 0, 0, 752.28, 562.978, 0.623428, 710.306, 652.491, 0.632282, 652.466, 531.463, 0.650946, 689.156, 773.468, 0.688841, 526.169, 515.748, 0.71399, 694.47, 904.841, 0.683775, 668.236, 489.375, 0.645895, 521.027, 815.285, 0.723053, 442.105, 757.585, 0.728538, 484.133, 999.361, 0.718789, 415.85, 978.398, 0.705599, 410.535, 1115.08, 0.654209, 373.79, 1172.9, 0.703469, 694.618, 594.547, 0.610627, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0066.json new file mode 100644 index 0000000..2026172 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0066.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [778.57, 620.879, 0.676052, 810.061, 610.422, 0.409766, 778.642, 594.677, 0.663511, 0, 0, 0, 752.27, 557.739, 0.627349, 720.735, 652.358, 0.633845, 652.385, 531.518, 0.643167, 694.407, 773.403, 0.682895, 515.746, 520.853, 0.70582, 699.708, 904.737, 0.677929, 662.917, 499.952, 0.644615, 521.101, 815.345, 0.71073, 442.163, 762.879, 0.716213, 484.152, 999.396, 0.679834, 442.149, 983.691, 0.72692, 405.435, 1130.82, 0.550492, 405.266, 1188.61, 0.713202, 694.604, 589.328, 0.615011, 852.28, 552.578, 0.596824, 452.718, 1209.76, 0.311672, 457.93, 1193.94, 0.282367, 394.892, 1141.33, 0.393031, 463.239, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0082.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0082.json new file mode 100644 index 0000000..7db4fa0 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0082.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [773.476, 573.656, 0.687267, 789.188, 568.223, 0.458234, 773.286, 557.752, 0.656378, 0, 0, 0, 731.183, 515.751, 0.663001, 741.829, 615.663, 0.630136, 610.368, 573.479, 0.672886, 783.98, 683.939, 0.529475, 468.401, 647.089, 0.600288, 857.468, 752.353, 0.554331, 520.936, 652.53, 0.323599, 620.911, 862.695, 0.624634, 526.348, 831.231, 0.623859, 557.721, 1025.81, 0.608085, 557.841, 1046.76, 0.636244, 436.735, 1078.35, 0.654245, 494.729, 1215.02, 0.620668, 694.481, 578.816, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0084.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0084.json new file mode 100644 index 0000000..da28319 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam01_json/cam01.0084.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [773.246, 573.632, 0.69963, 783.932, 568.185, 0.599042, 768.008, 552.557, 0.651279, 0, 0, 0, 720.761, 520.906, 0.641907, 752.266, 626.119, 0.608574, 620.836, 578.756, 0.655054, 694.533, 757.578, 0.243895, 478.923, 652.517, 0.565623, 757.619, 810.119, 0.208231, 526.236, 694.412, 0.600248, 626.195, 862.785, 0.628696, 542.085, 841.646, 0.589351, 573.637, 1046.67, 0.627251, 568.284, 1041.55, 0.65046, 447.333, 1078.38, 0.649634, 494.791, 1209.78, 0.609929, 694.623, 584.044, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0052.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0052.json new file mode 100644 index 0000000..e5e7c14 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0052.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [689.243, 589.314, 0.471838, 699.8, 578.799, 0.423905, 689.089, 568.424, 0.460162, 0, 0, 0, 652.552, 552.491, 0.392592, 694.555, 647.136, 0.655906, 578.837, 542.011, 0.60661, 731.203, 773.418, 0.65091, 463.233, 510.459, 0.575648, 741.773, 894.298, 0.671103, 484.184, 442.123, 0.520983, 526.315, 789.099, 0.626441, 447.305, 741.845, 0.63829, 521.057, 957.416, 0.644081, 315.849, 868.082, 0.672385, 573.514, 1073.09, 0.644772, 221.324, 1004.67, 0.643693, 641.984, 599.86, 0.582667, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0054.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0054.json new file mode 100644 index 0000000..a5f1a93 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0054.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [683.995, 594.494, 0.501868, 694.548, 578.904, 0.470708, 678.672, 568.467, 0.482928, 710.278, 578.842, 0.169355, 647.293, 547.346, 0.405352, 694.498, 647.172, 0.659348, 573.676, 541.984, 0.610497, 731.196, 773.282, 0.65072, 457.908, 510.496, 0.571244, 741.831, 889.06, 0.673078, 484.318, 442.058, 0.522328, 526.336, 789.179, 0.626298, 442.265, 741.87, 0.644782, 521.045, 957.322, 0.66231, 321.135, 873.199, 0.679337, 573.619, 1073.05, 0.659703, 237.021, 1015.15, 0.626853, 641.804, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0060.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0060.json new file mode 100644 index 0000000..550cbde --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0060.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [652.621, 584.175, 0.418649, 684.04, 578.733, 0.392671, 652.376, 568.265, 0.410712, 694.567, 573.6, 0.177979, 636.698, 541.962, 0.34729, 689.318, 636.742, 0.64714, 568.248, 536.763, 0.588514, 725.997, 762.838, 0.639115, 442.149, 520.956, 0.564851, 741.767, 878.491, 0.656911, 463.21, 457.871, 0.42461, 526.39, 778.569, 0.628105, 447.393, 741.754, 0.636853, 521.06, 946.984, 0.673916, 358.051, 899.462, 0.661688, 573.59, 1073.08, 0.67522, 326.442, 1067.65, 0.686285, 626.105, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0062.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0062.json new file mode 100644 index 0000000..4b8b839 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0062.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [647.153, 584.08, 0.519762, 668.188, 573.663, 0.443594, 641.964, 568.276, 0.501519, 694.334, 573.566, 0.241164, 626.093, 536.849, 0.40969, 689.161, 636.693, 0.663537, 563.008, 536.736, 0.62016, 720.84, 762.772, 0.645078, 436.814, 521.065, 0.606032, 741.786, 873.298, 0.671576, 452.683, 468.485, 0.515693, 531.544, 778.569, 0.633104, 447.371, 747.064, 0.654922, 526.151, 946.895, 0.674346, 389.516, 920.593, 0.65073, 573.551, 1073.1, 0.667492, 363.304, 1078.27, 0.638704, 615.601, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0064.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0064.json new file mode 100644 index 0000000..f75d057 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0064.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [647.244, 584.046, 0.494491, 663.026, 573.556, 0.410444, 647.019, 568.224, 0.470025, 689.268, 568.4, 0.170666, 620.941, 536.718, 0.404099, 683.953, 631.356, 0.648322, 557.706, 531.6, 0.604786, 720.728, 757.562, 0.631392, 426.407, 526.211, 0.608378, 741.816, 868.019, 0.658757, 442.131, 468.431, 0.505714, 536.752, 778.526, 0.627229, 447.467, 752.245, 0.650047, 526.287, 946.896, 0.661975, 400.083, 931.078, 0.66766, 573.545, 1073.08, 0.655535, 394.91, 1083.58, 0.642491, 610.38, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0066.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0066.json new file mode 100644 index 0000000..4a11ce1 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0066.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [641.829, 578.84, 0.573832, 652.437, 568.447, 0.526627, 631.45, 563.118, 0.537527, 678.727, 573.501, 0.19108, 605.201, 531.497, 0.456994, 678.763, 626.136, 0.647751, 531.555, 531.539, 0.618214, 715.494, 747.123, 0.640982, 415.793, 531.549, 0.603396, 741.747, 862.855, 0.671893, 415.861, 494.723, 0.56894, 536.798, 778.694, 0.631578, 447.407, 762.737, 0.668848, 531.471, 946.909, 0.669044, 426.323, 941.505, 0.665229, 573.468, 1073.07, 0.657385, 436.748, 1109.92, 0.641974, 599.927, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0070.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0070.json new file mode 100644 index 0000000..dc3f290 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0070.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [620.928, 568.247, 0.433248, 641.893, 562.853, 0.396216, 610.478, 547.272, 0.389696, 647.124, 541.99, 0.183732, 589.288, 521.035, 0.415524, 652.567, 610.361, 0.531878, 521.008, 536.75, 0.519039, 710.211, 731.223, 0.521132, 400.148, 557.766, 0.425016, 741.851, 846.935, 0.498096, 394.97, 515.669, 0.438518, 541.983, 783.948, 0.569104, 452.646, 773.352, 0.599819, 531.503, 952.123, 0.609643, 457.867, 952.124, 0.59971, 568.167, 1083.53, 0.572056, 478.953, 1130.8, 0.552726, 584.162, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0072.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0072.json new file mode 100644 index 0000000..e38bf7a --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0072.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [605.209, 563.039, 0.488038, 626.172, 552.521, 0.408111, 599.877, 536.699, 0.44073, 636.696, 526.228, 0.191421, 573.569, 515.784, 0.451316, 647.218, 605.011, 0.589624, 510.543, 531.609, 0.558873, 705.057, 715.585, 0.560345, 399.967, 563.005, 0.506615, 746.995, 831.221, 0.558473, 389.558, 521.016, 0.520402, 552.533, 789.147, 0.586248, 457.956, 773.481, 0.60774, 536.729, 952.242, 0.612048, 473.638, 962.594, 0.60664, 563.155, 1078.34, 0.579814, 494.782, 1136.16, 0.56647, 573.646, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0074.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0074.json new file mode 100644 index 0000000..32a3a9c --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0074.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [594.518, 552.514, 0.54804, 610.32, 531.529, 0.516007, 578.866, 526.197, 0.559261, 631.443, 526.157, 0.236502, 562.955, 510.446, 0.495428, 647.056, 589.425, 0.659404, 489.453, 541.99, 0.627851, 699.808, 699.702, 0.675566, 373.803, 578.854, 0.555698, 752.345, 815.321, 0.664716, 357.976, 547.309, 0.522417, 562.978, 794.361, 0.633548, 457.848, 778.701, 0.637928, 552.594, 957.401, 0.629953, 478.964, 967.859, 0.659801, 568.242, 1073.08, 0.593519, 515.65, 1136.13, 0.647965, 568.294, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0076.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0076.json new file mode 100644 index 0000000..0721ab5 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0076.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [573.484, 536.765, 0.586448, 589.264, 521.156, 0.550198, 563.152, 520.986, 0.589399, 610.514, 520.838, 0.345521, 536.753, 505.192, 0.44957, 641.801, 584.136, 0.674214, 478.963, 542.077, 0.632603, 705.088, 694.384, 0.668246, 368.606, 589.335, 0.585885, 762.904, 799.641, 0.651908, 342.158, 573.698, 0.5936, 568.191, 799.634, 0.650362, 463.177, 789.137, 0.63447, 552.518, 967.909, 0.616898, 484.202, 978.379, 0.661745, 563.075, 1078.29, 0.532057, 526.203, 1130.92, 0.604933, 562.986, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0078.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0078.json new file mode 100644 index 0000000..ba92599 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0078.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [563.07, 526.253, 0.599438, 573.538, 515.826, 0.567055, 547.248, 515.748, 0.574665, 599.813, 510.389, 0.320816, 521.037, 500.003, 0.467354, 626.208, 573.7, 0.675235, 463.172, 557.705, 0.638124, 710.256, 683.892, 0.641396, 358.02, 605.115, 0.592344, 778.54, 773.352, 0.658047, 321.196, 573.702, 0.582436, 568.404, 804.923, 0.660003, 473.658, 804.878, 0.653167, 557.764, 973.15, 0.600243, 489.558, 983.677, 0.672723, 563.087, 1073.08, 0.500335, 526.203, 1141.34, 0.626372, 542.077, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0080.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0080.json new file mode 100644 index 0000000..de35125 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0080.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [526.345, 526.186, 0.538089, 552.496, 515.694, 0.496967, 520.961, 515.638, 0.528049, 573.626, 500.005, 0.400471, 500.013, 499.913, 0.38775, 615.666, 568.433, 0.678895, 447.323, 562.966, 0.658874, 720.751, 652.426, 0.623906, 347.508, 610.394, 0.622389, 789.207, 736.599, 0.638737, 300.178, 599.79, 0.608715, 573.519, 810.054, 0.656097, 473.708, 810.058, 0.654934, 563.112, 978.426, 0.633238, 489.504, 988.896, 0.680277, 568.201, 1073.04, 0.525095, 521.075, 1141.42, 0.649198, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0082.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0082.json new file mode 100644 index 0000000..979b6d8 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0082.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [510.534, 526.191, 0.557814, 521.065, 515.654, 0.555775, 494.661, 515.696, 0.524589, 562.928, 499.911, 0.492367, 478.997, 494.784, 0.264872, 605.17, 563.091, 0.673772, 436.955, 563.09, 0.670624, 705.103, 620.858, 0.594845, 342.184, 620.895, 0.625986, 810.094, 694.431, 0.601668, 273.821, 615.62, 0.624725, 573.653, 810.183, 0.656939, 478.894, 815.359, 0.663674, 568.339, 983.609, 0.647523, 494.649, 988.931, 0.695291, 568.434, 1067.84, 0.517708, 521.034, 1141.43, 0.645152, 520.97, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0084.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0084.json new file mode 100644 index 0000000..085257c --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0084.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [489.515, 526.203, 0.546398, 510.425, 515.625, 0.546928, 478.862, 515.77, 0.52289, 526.287, 494.646, 0.519016, 452.679, 505.237, 0.295249, 589.384, 557.703, 0.641026, 426.298, 568.382, 0.668632, 720.747, 599.835, 0.579325, 331.676, 641.976, 0.617827, 820.651, 652.394, 0.567132, 273.827, 641.851, 0.58304, 578.821, 815.373, 0.652589, 484.103, 815.531, 0.664905, 568.416, 988.985, 0.650386, 494.705, 994.172, 0.68577, 573.512, 1067.82, 0.456784, 526.176, 1141.4, 0.618978, 510.459, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0086.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0086.json new file mode 100644 index 0000000..3fc6b1f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0086.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [473.567, 526.343, 0.629123, 484.123, 515.724, 0.6417, 452.616, 520.884, 0.61979, 515.674, 499.925, 0.597031, 436.894, 510.515, 0.281908, 573.705, 557.721, 0.640505, 405.449, 578.772, 0.687465, 694.612, 573.503, 0.551537, 321.313, 652.497, 0.669101, 820.622, 605.164, 0.448324, 237.076, 668.145, 0.627804, 589.274, 815.432, 0.645526, 489.42, 820.655, 0.666164, 573.498, 994.197, 0.66268, 494.737, 994.22, 0.68019, 573.626, 1078.27, 0.452961, 526.147, 1141.41, 0.635362, 494.728, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0090.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0090.json new file mode 100644 index 0000000..9eac4a0 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0090.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [436.908, 552.562, 0.593753, 447.357, 526.168, 0.614252, 415.834, 526.395, 0.560729, 484.161, 510.519, 0.570739, 400.203, 526.205, 0.154951, 568.184, 547.342, 0.623995, 399.964, 599.896, 0.687692, 678.717, 531.533, 0.556809, 321.285, 689.3, 0.702261, 778.697, 531.567, 0.445285, 226.679, 705.094, 0.64483, 589.315, 815.357, 0.6373, 484.324, 820.706, 0.667847, 568.429, 994.234, 0.663971, 494.679, 999.417, 0.675532, 573.654, 1115, 0.589099, 526.154, 1146.61, 0.651416, 478.937, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0092.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0092.json new file mode 100644 index 0000000..693ceea --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0092.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [426.405, 562.952, 0.595697, 436.963, 526.367, 0.60247, 405.294, 536.765, 0.547869, 473.594, 515.716, 0.589371, 399.957, 531.58, 0.126352, 557.822, 552.517, 0.61294, 394.819, 605.202, 0.683781, 673.488, 526.191, 0.618061, 326.434, 699.686, 0.689621, 783.836, 520.951, 0.51326, 226.686, 736.629, 0.65662, 589.388, 815.356, 0.640549, 489.482, 820.75, 0.660342, 568.328, 994.2, 0.673308, 489.512, 1004.64, 0.670275, 573.601, 1120.3, 0.610088, 526.141, 1146.67, 0.649424, 473.621, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0094.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0094.json new file mode 100644 index 0000000..b5d1c1e --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0094.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [421.133, 563.034, 0.560707, 436.797, 531.537, 0.549603, 400.135, 547.242, 0.513166, 463.121, 515.749, 0.555971, 394.703, 547.261, 0.132972, 552.591, 547.295, 0.603102, 394.763, 610.309, 0.673965, 668.199, 521.15, 0.622623, 326.518, 699.88, 0.660635, 699.823, 678.626, 0.0972349, 231.832, 752.339, 0.644349, 589.279, 815.377, 0.637353, 484.296, 820.792, 0.655446, 568.276, 999.356, 0.661892, 489.505, 999.522, 0.668009, 568.416, 1136.18, 0.607334, 521.127, 1146.66, 0.655779, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0096.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0096.json new file mode 100644 index 0000000..fc41262 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0096.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [410.554, 563.03, 0.564381, 426.335, 531.547, 0.529994, 394.957, 547.246, 0.505728, 452.7, 515.745, 0.551429, 389.616, 536.792, 0.113417, 547.293, 541.993, 0.609922, 394.678, 610.266, 0.674177, 662.934, 521.078, 0.661294, 331.639, 705.055, 0.650816, 757.541, 494.702, 0.623519, 231.939, 762.791, 0.640774, 584.127, 815.401, 0.636291, 484.268, 825.892, 0.646155, 563.013, 999.44, 0.653105, 489.445, 1004.74, 0.669115, 568.313, 1157.22, 0.643953, 521.106, 1146.54, 0.651463, 463.171, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0098.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0098.json new file mode 100644 index 0000000..389bbee --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam02_json/cam02.0098.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [410.556, 562.939, 0.579066, 426.311, 526.385, 0.561604, 394.905, 542.026, 0.535466, 452.575, 510.558, 0.556438, 384.328, 531.567, 0.132387, 536.844, 536.825, 0.608488, 389.571, 605.209, 0.668823, 662.912, 526.269, 0.645891, 331.647, 705.01, 0.657131, 747.041, 494.669, 0.635891, 237.095, 762.901, 0.644541, 578.89, 815.406, 0.639088, 484.11, 825.898, 0.649502, 557.712, 999.538, 0.634222, 489.385, 1004.75, 0.655957, 563.102, 1167.62, 0.635954, 521.102, 1141.4, 0.628165, 457.955, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0009.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0009.json new file mode 100644 index 0000000..181485c --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0009.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [494.755, 557.808, 0.174478, 489.556, 521.097, 0.240656, 0, 0, 0, 515.654, 521.053, 0.682813, 578.926, 510.508, 0.171722, 526.205, 641.969, 0.710664, 668.221, 594.674, 0.71862, 505.19, 810.19, 0.740443, 747.123, 694.465, 0.71948, 463.128, 952.111, 0.696235, 668.227, 741.863, 0.56967, 578.782, 883.693, 0.705258, 678.665, 867.994, 0.703689, 521.131, 1036.28, 0.732574, 652.497, 1067.81, 0.745597, 557.759, 1194, 0.706031, 699.818, 1251.83, 0.708004, 573.461, 573.658, 0.689818, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0018.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0018.json new file mode 100644 index 0000000..237a30a --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0018.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [400.041, 573.565, 0.088964, 400.021, 562.997, 0.127695, 0, 0, 0, 426.336, 563.076, 0.61025, 500.003, 526.25, 0.289432, 447.453, 689.117, 0.684616, 599.854, 594.564, 0.66958, 436.765, 857.426, 0.682674, 699.713, 636.706, 0.531046, 415.786, 983.693, 0.669577, 594.578, 641.969, 0.159358, 562.941, 873.237, 0.655415, 647.185, 847.002, 0.645215, 520.896, 1025.65, 0.696977, 641.994, 1004.74, 0.697591, 557.802, 1193.94, 0.704061, 689.3, 1172.98, 0.711606, 489.531, 599.814, 0.654428, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0027.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0027.json new file mode 100644 index 0000000..950c3d5 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0027.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 368.546, 605.189, 0.599573, 442.061, 563.126, 0.431443, 400.171, 720.773, 0.688741, 536.819, 610.268, 0.661399, 394.822, 883.744, 0.703277, 662.996, 584.084, 0.593007, 389.467, 999.355, 0.685736, 610.525, 515.726, 0.49502, 531.467, 868.074, 0.62899, 620.86, 820.737, 0.640867, 505.246, 1025.73, 0.666628, 647.223, 941.625, 0.666612, 557.806, 1193.88, 0.675067, 694.446, 1078.34, 0.673862, 442.096, 631.477, 0.639794, 347.414, 515.823, 0.62247, 479.058, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0034.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0034.json new file mode 100644 index 0000000..590a38f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0034.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [336.967, 662.977, 0.0706588, 0, 0, 0, 0, 0, 0, 342.259, 641.913, 0.525025, 405.255, 578.837, 0.340098, 394.814, 736.653, 0.648264, 510.43, 610.472, 0.662033, 389.442, 899.442, 0.636571, 626.082, 568.209, 0.607135, 363.291, 1015.22, 0.649797, 573.537, 478.933, 0.468965, 526.185, 867.92, 0.619148, 605.167, 810.198, 0.630481, 494.71, 1025.68, 0.644513, 641.777, 889.039, 0.59635, 557.834, 1193.88, 0.663771, 699.761, 1009.87, 0.654824, 410.656, 652.477, 0.594733, 315.856, 568.212, 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--git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0050.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0050.json new file mode 100644 index 0000000..5a285c9 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0050.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [300.149, 684.025, 0.0972748, 294.947, 678.701, 0.104476, 0, 0, 0, 305.438, 673.446, 0.374796, 336.991, 610.475, 0.123636, 373.845, 762.783, 0.602668, 436.861, 605.147, 0.595178, 363.224, 930.971, 0.622854, 515.696, 515.814, 0.497672, 326.498, 1041.5, 0.68971, 405.301, 442.123, 0.438712, 526.368, 836.399, 0.56652, 594.518, 768.106, 0.584902, 499.897, 1020.38, 0.58123, 578.772, 825.912, 0.367498, 562.924, 1188.76, 0.596783, 684.021, 899.633, 0.424038, 379.008, 683.965, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0052.json new file mode 100644 index 0000000..7683bd4 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0052.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0053.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0053.json new file mode 100644 index 0000000..c339828 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0053.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [273.935, 683.988, 0.0824289, 279.127, 673.438, 0.093829, 0, 0, 0, 289.705, 662.958, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0061.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0061.json new file mode 100644 index 0000000..4799e5d --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0061.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [273.901, 652.477, 0.174023, 273.843, 641.909, 0.210436, 0, 0, 0, 279.151, 641.928, 0.540945, 321.229, 578.925, 0.150338, 347.559, 731.209, 0.615029, 410.596, 578.904, 0.610448, 347.383, 899.597, 0.653185, 484.199, 510.349, 0.410897, 310.707, 1010.01, 0.692733, 384.242, 478.853, 0.422885, 515.765, 825.992, 0.615584, 584.159, 773.285, 0.624729, 499.992, 1020.4, 0.610839, 531.457, 878.586, 0.452759, 562.92, 1193.83, 0.623356, 557.769, 1030.87, 0.397295, 352.657, 652.392, 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"face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0068.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0068.json new file mode 100644 index 0000000..8090949 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0068.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [258.164, 626.188, 0.16774, 258.087, 605.133, 0.211767, 0, 0, 0, 268.734, 605.019, 0.518291, 315.95, 557.642, 0.109928, 342.17, 694.554, 0.629387, 405.388, 568.428, 0.594089, 331.673, 862.74, 0.670743, 489.49, 526.221, 0.442823, 279.287, 973.166, 0.660736, 394.686, 489.416, 0.446644, 499.955, 820.751, 0.599664, 562.95, 773.359, 0.587478, 494.74, 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--git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0070.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0070.json new file mode 100644 index 0000000..47492df --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0070.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [263.393, 610.382, 0.174536, 263.31, 594.54, 0.216544, 0, 0, 0, 273.923, 589.368, 0.53698, 315.983, 536.758, 0.107203, 342.169, 689.216, 0.637891, 415.889, 568.3, 0.618153, 321.287, 852.116, 0.670901, 500.044, 526.376, 0.412764, 273.89, 962.64, 0.653833, 394.89, 494.808, 0.393534, 489.416, 825.917, 0.61274, 557.787, 778.706, 0.587573, 484.334, 1020.48, 0.644414, 473.725, 957.398, 0.51673, 562.967, 1188.68, 0.646801, 452.722, 1099.36, 0.596857, 342.175, 605.189, 0.582445, 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"face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0077.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0077.json new file mode 100644 index 0000000..0695c54 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0077.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [263.415, 573.604, 0.266029, 258.157, 562.951, 0.311481, 0, 0, 0, 274.045, 542.059, 0.595174, 326.437, 500.018, 0.0957213, 331.805, 641.792, 0.66502, 426.393, 557.768, 0.615132, 310.567, 778.678, 0.687156, 520.959, 568.301, 0.398218, 226.612, 894.236, 0.693159, 405.353, 521.172, 0.343137, 436.894, 836.401, 0.62734, 499.989, 810.105, 0.598109, 468.397, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0079.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0079.json new file mode 100644 index 0000000..82b87ed --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0079.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [268.5, 557.823, 0.387058, 263.417, 526.401, 0.449268, 0, 0, 0, 284.471, 521.08, 0.629024, 0, 0, 0, 331.74, 615.714, 0.659792, 426.356, 552.584, 0.60723, 289.675, 762.838, 0.653513, 515.82, 589.364, 0.461036, 216.119, 862.629, 0.686605, 436.869, 584.121, 0.155866, 426.324, 825.933, 0.636466, 489.39, 810.072, 0.599, 452.573, 1020.47, 0.671211, 431.548, 989.018, 0.578535, 552.569, 1178.18, 0.634832, 431.671, 1130.9, 0.638749, 342.284, 568.195, 0.619781, 237.137, 473.623, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0088.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0088.json new file mode 100644 index 0000000..e4a90bb --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0088.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [268.617, 521.09, 0.26216, 268.668, 515.648, 0.324459, 0, 0, 0, 289.709, 510.43, 0.633742, 347.534, 489.548, 0.0992487, 310.749, 568.409, 0.670299, 421.107, 573.488, 0.652142, 205.537, 626.104, 0.605211, 520.975, 662.911, 0.546152, 68.819, 641.987, 0.610853, 515.713, 783.928, 0.419313, 379.008, 815.493, 0.632769, 452.724, 810.187, 0.628109, 352.69, 989.005, 0.661703, 400.177, 962.664, 0.642439, 452.727, 1125.72, 0.655995, 436.938, 1115.16, 0.618169, 337.024, 557.758, 0.647174, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0097.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0097.json new file mode 100644 index 0000000..46cb9d1 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam03_json/cam03.0097.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [263.354, 515.729, 0.128468, 268.449, 505.208, 0.166918, 0, 0, 0, 279.163, 505.184, 0.594384, 342.172, 494.714, 0.222485, 273.92, 563.057, 0.627644, 405.402, 573.665, 0.684156, 179.154, 568.457, 0.49327, 494.714, 689.18, 0.631116, 58.2229, 526.318, 0.437754, 500.002, 778.571, 0.272339, 326.516, 815.316, 0.618734, 410.551, 810.077, 0.636408, 305.477, 962.577, 0.640233, 400.042, 962.68, 0.711312, 336.89, 1109.92, 0.649459, 426.299, 1125.56, 0.670437, 321.321, 552.539, 0.631692, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0006.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0006.json new file mode 100644 index 0000000..3788441 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0006.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [305.447, 568.279, 0.0970573, 0, 0, 0, 294.924, 557.772, 0.146684, 200.327, 594.667, 0.253491, 273.913, 568.348, 0.69549, 189.8, 731.374, 0.689489, 342.297, 662.917, 0.689951, 215.983, 894.262, 0.69581, 484.277, 778.573, 0.73879, 258.076, 994.156, 0.663788, 610.356, 815.314, 0.700852, 363.307, 973.101, 0.624155, 447.454, 936.279, 0.673352, 526.346, 1073.05, 0.594038, 526.264, 1141.3, 0.701299, 610.49, 1199.16, 0.626172, 536.746, 1356.95, 0.674173, 263.361, 647.163, 0.67078, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0008.json new file mode 100644 index 0000000..108d9eb --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0008.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [289.687, 568.171, 0.0869382, 0, 0, 0, 279.253, 552.57, 0.14367, 195.088, 599.837, 0.265518, 268.651, 568.371, 0.678359, 189.76, 731.379, 0.680182, 336.988, 652.526, 0.679222, 221.215, 894.201, 0.694976, 484.153, 762.819, 0.690447, 263.405, 988.916, 0.677759, 605.12, 773.279, 0.703689, 378.989, 957.395, 0.622574, 457.943, 915.361, 0.628803, 536.763, 1073.01, 0.565442, 531.596, 1130.93, 0.655301, 610.398, 1199.13, 0.621009, 531.606, 1356.84, 0.656988, 258.079, 647.121, 0.673891, 221.213, 499.989, 0.633242, 663.006, 1193.97, 0.51428, 652.512, 1188.72, 0.54434, 610.4, 1225.48, 0.521769, 610.457, 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file mode 100644 index 0000000..328f6c4 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0010.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [279.159, 568.281, 0.103364, 0, 0, 0, 273.822, 557.81, 0.15385, 189.815, 605.108, 0.239162, 263.292, 573.486, 0.642828, 194.953, 736.574, 0.662468, 331.725, 652.455, 0.665165, 221.351, 894.282, 0.695231, 478.869, 736.553, 0.663667, 273.842, 994.167, 0.677516, 599.769, 736.678, 0.672467, 389.5, 946.958, 0.622862, 463.206, 904.774, 0.61593, 552.468, 1067.87, 0.558457, 547.327, 1120.33, 0.63474, 615.599, 1193.99, 0.598064, 531.529, 1341.23, 0.643561, 252.795, 647.192, 0.671623, 205.568, 510.481, 0.614425, 673.445, 1188.74, 0.506896, 657.736, 1183.49, 0.526318, 610.425, 1215.05, 0.502363, 610.397, 1330.69, 0.563263, 594.61, 1356.96, 0.588423, 520.996, 1367.48, 0.638235], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0015.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0015.json new file mode 100644 index 0000000..73134c8 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0015.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [273.751, 573.515, 0.0977866, 0, 0, 0, 268.451, 568.213, 0.147434, 184.559, 615.68, 0.217823, 247.565, 578.793, 0.637537, 205.514, 747.007, 0.657816, 321.119, 647.138, 0.686168, 237.117, 899.474, 0.663839, 478.876, 689.242, 0.690724, 305.392, 989.033, 0.673173, 584.078, 631.451, 0.649913, 400.138, 941.575, 0.614804, 478.951, 888.964, 0.616179, 568.253, 1036.2, 0.510688, 605.018, 1073.05, 0.678435, 610.246, 1188.62, 0.49435, 568.422, 1288.54, 0.678602, 242.303, 652.396, 0.65694, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0033.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0033.json new file mode 100644 index 0000000..155a9e2 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0033.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [258.042, 615.679, 0.133826, 0, 0, 0, 237.061, 610.439, 0.181977, 189.794, 689.104, 0.240079, 226.659, 636.601, 0.578706, 231.823, 783.893, 0.644226, 305.41, 657.657, 0.627213, 310.598, 915.294, 0.616289, 405.254, 605.011, 0.639285, 384.21, 988.928, 0.670345, 452.642, 478.973, 0.645986, 457.973, 899.537, 0.595047, 520.969, 825.893, 0.619291, 594.679, 999.532, 0.662379, 741.884, 899.51, 0.671333, 615.716, 1194.07, 0.64889, 873.22, 1067.73, 0.695584, 252.831, 694.6, 0.644142, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0042.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0042.json new file mode 100644 index 0000000..de3b66a --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0042.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 205.54, 699.728, 0.416572, 242.368, 647.2, 0.483175, 247.585, 794.393, 0.61992, 315.853, 647.243, 0.653861, 310.678, 941.564, 0.646221, 399.95, 562.915, 0.654369, 384.238, 1009.87, 0.632716, 394.854, 442.181, 0.645569, 478.897, 894.222, 0.59885, 531.499, 810.169, 0.602695, 605.075, 994.216, 0.660317, 768.083, 847.017, 0.663133, 620.939, 1194.03, 0.655575, 947.008, 962.605, 0.676694, 268.556, 705.081, 0.630202, 173.996, 620.95, 0.572502, 652.479, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0049.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0049.json new file mode 100644 index 0000000..1d51c83 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0049.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 221.231, 694.571, 0.434141, 263.242, 641.985, 0.409039, 263.312, 789.086, 0.628796, 321.197, 636.615, 0.638575, 310.661, 936.241, 0.625729, 415.787, 526.265, 0.651765, 358.134, 1009.87, 0.625792, 373.768, 442.183, 0.559805, 484.263, 883.709, 0.594107, 547.321, 789.143, 0.574699, 610.302, 994.268, 0.65662, 773.327, 820.754, 0.684818, 620.961, 1193.96, 0.650823, 952.117, 925.858, 0.645816, 274.02, 699.834, 0.625324, 189.684, 626.209, 0.566232, 647.29, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0056.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0056.json new file mode 100644 index 0000000..1744e59 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0056.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 231.781, 678.659, 0.441224, 273.759, 626.073, 0.390228, 268.587, 768.156, 0.653261, 337.005, 610.467, 0.625942, 305.433, 904.891, 0.61037, 436.8, 515.721, 0.640745, 352.668, 994.114, 0.658792, 394.666, 463.112, 0.544759, 484.253, 868.097, 0.617762, 557.754, 778.694, 0.588734, 599.87, 999.425, 0.660841, 752.343, 825.897, 0.673199, 620.825, 1194, 0.669107, 904.859, 952.102, 0.672355, 289.727, 694.396, 0.618101, 200.37, 610.373, 0.567109, 652.463, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0063.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0063.json new file mode 100644 index 0000000..9395800 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0063.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 252.8, 647.072, 0.487526, 305.394, 589.351, 0.437534, 273.915, 741.885, 0.645343, 363.347, 584.089, 0.635673, 310.594, 888.918, 0.635344, 468.471, 515.725, 0.651617, 352.651, 973.135, 0.649329, 426.291, 447.336, 0.545506, 484.237, 857.491, 0.631957, 563.055, 773.372, 0.62709, 589.363, 1004.62, 0.66636, 699.825, 878.521, 0.681212, 615.737, 1193.92, 0.659681, 789.196, 1015.19, 0.646917, 315.916, 657.684, 0.626216, 226.564, 573.579, 0.65442, 652.511, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0070.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0070.json new file mode 100644 index 0000000..75f5775 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0070.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 274.03, 605.019, 0.47707, 331.759, 557.766, 0.427803, 289.738, 694.505, 0.660984, 400.183, 568.249, 0.682408, 310.571, 846.951, 0.620303, 521.065, 515.839, 0.617849, 347.549, 936.357, 0.664735, 494.791, 442.208, 0.430189, 484.195, 852.157, 0.635669, 568.308, 778.611, 0.641143, 578.898, 999.483, 0.674235, 662.976, 936.356, 0.650937, 620.956, 1188.73, 0.632164, 710.27, 1062.45, 0.651066, 342.272, 626.133, 0.607259, 263.431, 526.25, 0.642448, 647.152, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0084.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0084.json new file mode 100644 index 0000000..14fd159 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0084.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [457.864, 468.487, 0.0674946, 0, 0, 0, 447.509, 463.187, 0.094786, 373.754, 489.568, 0.277229, 436.957, 473.688, 0.587227, 336.984, 594.531, 0.65933, 500.014, 531.54, 0.666416, 258.069, 683.975, 0.587044, 631.39, 578.842, 0.662389, 205.577, 752.338, 0.632562, 689.085, 510.539, 0.691874, 452.708, 820.776, 0.64397, 547.299, 783.853, 0.614923, 563.019, 967.941, 0.688955, 636.562, 936.398, 0.685312, 599.868, 1141.36, 0.682495, 678.713, 1088.82, 0.638819, 415.873, 526.372, 0.635687, 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a/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0093.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0093.json new file mode 100644 index 0000000..04f6406 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0093.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [0, 0, 0, 0, 0, 0, 0, 0, 0, 436.756, 468.42, 0.225152, 505.236, 468.357, 0.586867, 379.074, 557.822, 0.633179, 531.499, 547.235, 0.638279, 263.263, 599.831, 0.528065, 652.514, 631.392, 0.682687, 195.116, 568.386, 0.401939, 736.665, 584.032, 0.670062, 447.394, 810.145, 0.635313, 526.354, 778.69, 0.639333, 568.382, 936.281, 0.67327, 641.869, 925.836, 0.654628, 615.696, 1073.01, 0.662898, 673.458, 1078.25, 0.65106, 468.401, 520.948, 0.653996, 479.024, 400.114, 0.620289, 657.688, 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b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose-associated/cam04_json/cam04.0099.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [531.488, 457.954, 0.11794, 0, 0, 0, 521.081, 447.398, 0.15519, 442.077, 447.501, 0.2059, 515.66, 452.618, 0.649747, 389.543, 536.834, 0.635025, 531.499, 531.553, 0.644739, 268.661, 578.884, 0.621955, 647.198, 636.651, 0.694396, 252.879, 526.231, 0.572361, 736.502, 604.971, 0.678773, 452.671, 789.139, 0.617788, 531.503, 773.322, 0.642861, 578.841, 899.646, 0.612707, 636.742, 910.141, 0.655852, 647.128, 1052.03, 0.497321, 678.734, 1078.33, 0.674372, 478.827, 510.52, 0.674448, 494.658, 389.579, 0.64099, 710.252, 1052.06, 0.271555, 699.786, 1052, 0.255206, 641.878, 1073.06, 0.33751, 720.833, 1094.05, 0.557694, 715.472, 1109.78, 0.596989, 668.225, 1115.02, 0.639284], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0000.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0000.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0000.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0000.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0001.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0001.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0001.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0001.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0002.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0002.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0002.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0002.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0003.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0003.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0003.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0003.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0004.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0004.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0004.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0004.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0005.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0005.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0005.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0005.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0006.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0006.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0006.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0006.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0007.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0007.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0007.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0007.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0008.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0008.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0008.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0008.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0009.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0009.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0009.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0009.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0010.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0010.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0010.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0010.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0011.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0011.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0011.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0011.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0012.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0012.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0012.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0012.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0013.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0013.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0013.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0013.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0014.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0014.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0014.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0014.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0015.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0015.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0015.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0015.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0016.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0016.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0016.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0016.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0017.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0017.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0017.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0017.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0018.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0018.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0018.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0018.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0019.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0019.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0019.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0019.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0020.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0020.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0020.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0020.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0021.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0021.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0021.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0021.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0022.json b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0022.json similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0022.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0022.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam01_json/cam01.0023.json 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similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam04_json/cam04.0099.json rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/pose/cam04_json/cam04.0099.json diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam01.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam01.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam01.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam01.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam02.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam02.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam02.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam02.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam03.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam03.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam03.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam03.mp4 diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam04.mp4 b/Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam04.mp4 similarity index 100% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam04.mp4 rename to Pose2Sim/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/videos/cam04.mp4 diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/Config.toml similarity index 96% rename from Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/Config.toml rename to Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/Config.toml index c31ef68..1553cb9 100644 --- a/Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant00/S01_P00_T00_StaticTrial/Config.toml +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/Config.toml @@ -18,6 +18,7 @@ # [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. # frame_rate = 60 # FPS # frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -123,6 +124,7 @@ # [triangulation] +# reorder_trc = false # only checked if multi_person analysis # reproj_error_threshold_triangulation = 15 # px # likelihood_threshold_triangulation = 0.3 # min_cameras_for_triangulation = 2 @@ -137,7 +139,7 @@ # [filtering] # type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) +# display_figures = false # true or false (lowercase) # [filtering.butterworth] # order = 4 @@ -159,8 +161,8 @@ # [markerAugmentation] # ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg +# participant_height = [1.21, 1.72] # m # float if single person, list of float if multi-person (same order as the Static trials) +# participant_mass = [25.0, 70.0] # kg # [opensim] diff --git a/Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam01_img/.gitkeep b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_OpenSim/.gitkeep similarity index 100% rename from Pose2Sim/Demo/S01_Empty_Session/S01_Calibration/extrinsics/ext_cam01_img/.gitkeep rename to Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_OpenSim/.gitkeep diff --git a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/Config.toml similarity index 96% rename from Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml rename to Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/Config.toml index 2932041..987c89b 100644 --- a/Pose2Sim/Demo/S00_Demo_Session/S00_P00_SingleParticipant/S00_P00_T01_BalancingTrial/Config.toml +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/Config.toml @@ -18,6 +18,7 @@ # [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. # frame_rate = 60 # FPS # frame_range = [] # For example [10,300], or [] for all frames ## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate @@ -123,6 +124,7 @@ # [triangulation] +# reorder_trc = false # only checked if multi_person analysis # reproj_error_threshold_triangulation = 15 # px # likelihood_threshold_triangulation = 0.3 # min_cameras_for_triangulation = 2 @@ -137,7 +139,7 @@ # [filtering] # type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed -# display_figures = true # true or false (lowercase) +# display_figures = false # true or false (lowercase) # [filtering.butterworth] # order = 4 @@ -157,10 +159,10 @@ # kernel_size = 9 -# [markerAugmentation] +[markerAugmentation] # ## Only works on BODY_25 and BODY_25B models -# participant_height = 1.7 # m -# participant_mass = 70 # kg +participant_height = 1.21 # m # float if single person, list of float if multi-person (same order as the Static trials) +participant_mass = 25.0 # kg # [opensim] diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-3d/S00_P01_T00_StaticTrialParticipant1_0-12.trc b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-3d/S00_P01_T00_StaticTrialParticipant1_0-12.trc new file mode 100644 index 0000000..1b94866 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-3d/S00_P01_T00_StaticTrialParticipant1_0-12.trc @@ -0,0 +1,17 @@ +PathFileType 4 (X/Y/Z) S00_P01_T00_StaticTrialParticipant1_0-12.trc +DataRate CameraRate NumFrames NumMarkers Units OrigDataRate OrigDataStartFrame OrigNumFrames +60 60 12 21 m 60 0 12 +Frame# Time RHip RKnee RAnkle RBigToe RSmallToe RHeel LHip LKnee LAnkle LBigToe LSmallToe LHeel Neck Head Nose RShoulder RElbow RWrist LShoulder LElbow LWrist + X1 Y1 Z1 X2 Y2 Z2 X3 Y3 Z3 X4 Y4 Z4 X5 Y5 Z5 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00002.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00002.json new file mode 100644 index 0000000..9aad466 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00002.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [142.7197029219237, 452.1850126836162, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 253.56962836894903, 534.5794176993556, 1.0, 141.4964137335877, 518.3614698915701, 1.0, 281.81621370938285, 656.4462772426227, 1.0, 107.19082467355277, 618.048372563323, 1.0, 335.6002780312737, 750.0448355444595, 1.0, 89.90781217492507, 682.4635147740469, 1.0, 235.65913975498066, 768.0678267236143, 1.0, 179.53382927927382, 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00008.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00008.json new file mode 100644 index 0000000..9aad466 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose-associated/cam03_json/Static_cam_03.00008.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [142.7197029219237, 452.1850126836162, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 253.56962836894903, 534.5794176993556, 1.0, 141.4964137335877, 518.3614698915701, 1.0, 281.81621370938285, 656.4462772426227, 1.0, 107.19082467355277, 618.048372563323, 1.0, 335.6002780312737, 750.0448355444595, 1.0, 89.90781217492507, 682.4635147740469, 1.0, 235.65913975498066, 768.0678267236143, 1.0, 179.53382927927382, 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose/cam02_json/Static_cam_02.00008.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose/cam02_json/Static_cam_02.00008.json new file mode 100644 index 0000000..e1c1406 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose/cam02_json/Static_cam_02.00008.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [427.3464900019353, 498.8134856779377, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 395.22335979254365, 596.569436016802, 1.0, 325.05748781202027, 629.0577120017178, 1.0, 454.6593231883056, 718.3762738421328, 1.0, 336.80183729755055, 805.1974595578574, 1.0, 474.1340616974865, 798.4643435027876, 1.0, 302.46706876939027, 953.5960163096411, 1.0, 423.12608210689837, 909.0332532384459, 1.0, 391.6836859327799, 946.0551491450317, 1.0, 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b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T00_StaticTrialParticipant1/pose/cam04_json/Static_cam_04.00011.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [476.9247556439333, 399.4908558946094, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 532.4305118003225, 477.7472567237922, 1.0, 576.409772268334, 432.74662560401225, 1.0, 536.478396760508, 608.2714939540501, 1.0, 613.079695388294, 518.834489239116, 1.0, 556.8331820317502, 709.6303387201369, 1.0, 660.5078601338757, 566.9310134219747, 1.0, 620.8804538022547, 690.8777944022152, 1.0, 639.3342529106104, 659.1655058127772, 1.0, 685.5945925074111, 822.6068332382686, 1.0, 698.4291049103266, 792.1697707034779, 1.0, 740.2815284778745, 957.370501472341, 1.0, 751.8625038860489, 920.2560546857491, 1.0, 536.3731498971515, 422.3049172633669, 1.0, 469.62687408051283, 338.4345626368323, 1.0, 683.9528387968365, 999.2046560614059, 1.0, 694.2591299318029, 1004.751602628833, 1.0, 763.7877980223417, 975.9075851918662, 1.0, 694.4765401530967, 969.3852581982906, 1.0, 710.2089121039246, 958.0307714435708, 1.0, 773.5140336396847, 941.6302787482834, 1.0], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/Config.toml new file mode 100644 index 0000000..36d202f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/Config.toml @@ -0,0 +1,252 @@ +############################################################################### +## PROJECT PARAMETERS ## +############################################################################### + + +# Configure your project parameters here. +# +# IMPORTANT: +# If a parameter is not found here, Pose2Sim will look for its value in the +# Config.toml file of the level above. This way, you can set global +# instructions for the Session and alter them for specific Participants or Trials. +# +# If you wish to overwrite a parameter for a specific trial or participant, +# edit its Config.toml file by uncommenting its key (e.g., [project]) +# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment +# [filtering.butterworth] and set cut_off_frequency = 10, etc. + + + +# [project] +# multi_person = false # true for trials with multiple participants. If false, only the main person in scene is analyzed. +# frame_rate = 60 # FPS +# frame_range = [] # For example [10,300], or [] for all frames +## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate +## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, +## frame_range = [0.1, 2.0]*frame_rate = [6, 120] + +# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. +# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] + + +## Take heart, calibration is not that complicated once you get the hang of it! +# [calibration] +# calibration_type = 'convert' # 'convert' or 'calculate' + + # [calibration.convert] + # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' + # [calibration.convert.qualisys] + # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 + # [calibration.convert.optitrack] # See readme for instructions + # [calibration.convert.vicon] # No parameter needed + # [calibration.convert.opencap] # No parameter needed + # [calibration.convert.easymocap] # No parameter needed + # [calibration.convert.biocv] # No parameter needed + # [calibration.convert.anipose] # No parameter needed + # [calibration.convert.freemocap] # No parameter needed + + + # [calibration.calculate] + ## Camera properties, theoretically need to be calculated only once in a camera lifetime + # [calibration.calculate.intrinsics] + # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? + # show_detection_intrinsics = true # true or false (lowercase) + # intrinsics_extension = 'jpg' # any video or image extension + # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) + # intrinsics_corners_nb = [4,7] + # intrinsics_square_size = 60 # mm + + ## Camera placements, need to be done before every session + # [calibration.calculate.extrinsics] + # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' + ## 'board' should be large enough to be detected when laid on the floor. Not recommended. + ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. + ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. + + # moving_cameras = false # Not implemented yet + # calculate_extrinsics = true # true or false (lowercase) + + # [calibration.calculate.extrinsics.board] + # show_reprojection_error = true # true or false (lowercase) + # extrinsics_extension = 'png' # any video or image extension + # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] + # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle + + # [calibration.calculate.extrinsics.scene] + # show_reprojection_error = true # true or false (lowercase) + # extrinsics_extension = 'png' # any video or image extension + ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. + ## in m -> unlike for intrinsics, NOT in mm! + # object_coords_3d = [[-2.0, 0.3, 0.0], + # [-2.0 , 0.0, 0.0], + # [-2.0, 0.0, 0.05], + # [-2.0, -0.3 , 0.0], + # [0.0, 0.3, 0.0], + # [0.0, 0.0, 0.0], + # [0.0, 0.0, 0.05], + # [0.0, -0.3, 0.0]] + + # [calibration.calculate.extrinsics.keypoints] + ## Coming soon! + + +# [pose] +# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' +# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, +# #With mediapipe: BLAZEPOSE. +# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. +# #With deeplabcut: CUSTOM. See example at the end of the file. +## What follows has not been implemented yet +# overwrite_pose = false +# openpose_path = '' # only checked if OpenPose is used + + +# [synchronization] +## COMING SOON! +# reset_sync = true # Recalculate synchronization even if already done +# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. +# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter +## Vertical speeds (on X, Y, or Z axis, or 2D speeds) +# speed_kind = 'y' # 'x', 'y', 'z', or '2D' +# vmax = 20 # px/s +# cam1_nb = 4 +# cam2_nb = 3 +# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 +# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints + + +# [personAssociation] +# single_person = true # false for multi-person analysis (not supported yet), true for only triangulating the main person in scene. +# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py +## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) +# reproj_error_threshold_association = 20 # px +# likelihood_threshold_association = 0.2 + + +# [triangulation] +# reorder_trc = false # only checked if multi_person analysis +# reproj_error_threshold_triangulation = 15 # px +# likelihood_threshold_triangulation = 0.3 +# min_cameras_for_triangulation = 2 +# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none +## 'none' if you don't want to interpolate missing points +# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps +# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated +# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower +# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low +# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! + + +# [filtering] +# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed +# display_figures = false # true or false (lowercase) + + # [filtering.butterworth] + # order = 4 + # cut_off_frequency = 6 # Hz + # [filtering.kalman] + ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? + # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise + # smooth = true # should be true, unless you need real-time filtering + # [filtering.butterworth_on_speed] + # order = 4 + # cut_off_frequency = 10 # Hz + # [filtering.gaussian] + # sigma_kernel = 2 #px + # [filtering.LOESS] + # nb_values_used = 30 # = fraction of data used * nb frames + # [filtering.median] + # kernel_size = 9 + + +[markerAugmentation] +# ## Only works on BODY_25 and BODY_25B models +participant_height = 1.72 # m # float if single person, list of float if multi-person (same order as the Static trials) +participant_mass = 70.0 # kg + + +# [opensim] +# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] +# # If this Config.toml file is at the Trial level, set to true or false (lowercase); +# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; +# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] +# opensim_bin_path = 'C:\OpenSim 4.4\bin' + + +## CUSTOM skeleton, if you trained your own DeepLabCut model for example. +## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. +## +## If you want to perform inverse kinematics, you will also need to create an OpenSim model +## and add to its markerset the location where you expect the triangulated keypoints to be detected. +## +## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). +## You can create as many custom skeletons as you want, just add them further down and rename them. +## +## Check your model hierarchy with: for pre, _, node in RenderTree(model): +## print(f'{pre}{node.name} id={node.id}') +# [pose.CUSTOM] +# name = "CHip" +# id = "None" +# [[pose.CUSTOM.children]] +# id = 12 +# name = "RHip" +# [[pose.CUSTOM.children.children]] +# id = 14 +# name = "RKnee" +# [[pose.CUSTOM.children.children.children]] +# id = 16 +# name = "RAnkle" +# [[pose.CUSTOM.children.children.children.children]] +# id = 22 +# name = "RBigToe" +# [[pose.CUSTOM.children.children.children.children.children]] +# id = 23 +# name = "RSmallToe" +# [[pose.CUSTOM.children.children.children.children]] +# id = 24 +# name = "RHeel" +# [[pose.CUSTOM.children]] +# id = 11 +# name = "LHip" +# [[pose.CUSTOM.children.children]] +# id = 13 +# name = "LKnee" +# [[pose.CUSTOM.children.children.children]] +# id = 15 +# name = "LAnkle" +# [[pose.CUSTOM.children.children.children.children]] +# id = 19 +# name = "LBigToe" +# [[pose.CUSTOM.children.children.children.children.children]] +# id = 20 +# name = "LSmallToe" +# [[pose.CUSTOM.children.children.children.children]] +# id = 21 +# name = "LHeel" +# [[pose.CUSTOM.children]] +# id = 17 +# name = "Neck" +# [[pose.CUSTOM.children.children]] +# id = 18 +# name = "Head" +# [[pose.CUSTOM.children.children.children]] +# id = 0 +# name = "Nose" +# [[pose.CUSTOM.children.children]] +# id = 6 +# name = "RShoulder" +# [[pose.CUSTOM.children.children.children]] +# id = 8 +# name = "RElbow" +# [[pose.CUSTOM.children.children.children.children]] +# id = 10 +# name = "RWrist" +# [[pose.CUSTOM.children.children]] +# id = 5 +# name = "LShoulder" +# [[pose.CUSTOM.children.children.children]] +# id = 7 +# name = "LElbow" +# [[pose.CUSTOM.children.children.children.children]] +# id = 9 +# name = "LWrist" diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose-3d/S00_P01_T01_StaticTrialParticipant2_0-12.trc b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose-3d/S00_P01_T01_StaticTrialParticipant2_0-12.trc new file mode 100644 index 0000000..d0f15f1 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose-3d/S00_P01_T01_StaticTrialParticipant2_0-12.trc @@ -0,0 +1,17 @@ +PathFileType 4 (X/Y/Z) 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00008.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00008.json new file mode 100644 index 0000000..2a30875 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00008.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [556.8487316231024, 590.3289140753218, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 598.9520678553939, 641.4495397739165, 1.0, 623.4674979978457, 603.9766595737558, 1.0, 601.6931364811679, 727.4217184858207, 1.0, 647.517353317098, 657.1452114872537, 1.0, 617.71565356033, 808.5377559508663, 1.0, 685.2407707096971, 692.6065621406044, 1.0, 652.0963115766193, 771.0167160125616, 1.0, 663.6259523067589, 747.3996603312406, 1.0, 702.3120638553016, 874.4862340624012, 1.0, 710.6908779270022, 852.4574830339564, 1.0, 739.2129155191075, 964.3966718265997, 1.0, 747.110354279145, 938.9970367023393, 1.0, 599.8704198987344, 602.8785276918352, 1.0, 552.3922091652273, 546.6956976943728, 1.0, 709.4636602618394, 989.0399643359423, 1.0, 715.2404323227782, 991.9949609795054, 1.0, 753.0218261558828, 976.2911156595661, 1.0, 716.2894300446967, 968.4797456279574, 1.0, 724.9410821722837, 962.1984341137794, 1.0, 759.7872808745225, 953.2814858050165, 1.0], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00009.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00009.json new file mode 100644 index 0000000..c6a48ae --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00009.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [556.8487316231024, 590.3289140753218, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 598.9520678553939, 641.4495397739165, 1.0, 623.4674979978457, 603.9766595737558, 1.0, 601.6931364844702, 727.4217184865668, 1.0, 647.517353317294, 657.1452114910849, 1.0, 617.7156535666462, 808.537755952076, 1.0, 685.2409959317723, 692.6064296113605, 1.0, 652.0963115766193, 771.0167160125616, 1.0, 663.6259523067589, 747.3996603312406, 1.0, 702.3120638553016, 874.4862340624012, 1.0, 710.6908779426916, 852.4574830292323, 1.0, 739.2129155191075, 964.3966718265997, 1.0, 747.1103543078618, 938.9970366947841, 1.0, 599.8704198987344, 602.8785276918352, 1.0, 552.3922091652273, 546.6956976943728, 1.0, 709.4636602618394, 989.0399643359423, 1.0, 715.2404323227782, 991.9949609795054, 1.0, 753.0218261558828, 976.2911156595661, 1.0, 716.2894300775416, 968.4797456246974, 1.0, 724.9410822047225, 962.1984341095853, 1.0, 759.7872809052475, 953.2814857961421, 1.0], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00010.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00010.json new file mode 100644 index 0000000..adda6d3 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00010.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [556.8487316231024, 590.3289140753218, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 598.9520678553939, 641.4495397739165, 1.0, 623.4674979978457, 603.9766595737558, 1.0, 601.6931364848954, 727.4217184853326, 1.0, 647.517353317098, 657.1452114872537, 1.0, 617.7156535672788, 808.537755949408, 1.0, 685.2407707096971, 692.6065621406044, 1.0, 652.0963115766193, 771.0167160125616, 1.0, 663.6259523067589, 747.3996603312406, 1.0, 702.3120638553016, 874.4862340624012, 1.0, 710.6908779270022, 852.4574830339564, 1.0, 739.2129155191075, 964.3966718265997, 1.0, 747.110354279145, 938.9970367023393, 1.0, 599.8704198987344, 602.8785276918352, 1.0, 552.3922091652273, 546.6956976943728, 1.0, 709.4636602618394, 989.0399643359423, 1.0, 715.2404323227782, 991.9949609795054, 1.0, 753.0218261558828, 976.2911156595661, 1.0, 716.2894300446967, 968.4797456279574, 1.0, 724.9410821722837, 962.1984341137794, 1.0, 759.7872808745225, 953.2814858050165, 1.0], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00011.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00011.json new file mode 100644 index 0000000..29a10b1 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T01_StaticTrialParticipant2/pose/cam04_json/Static_cam_04.00011.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [556.8487316231024, 590.3289140753218, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 598.9520678553939, 641.4495397739165, 1.0, 623.4674979978457, 603.9766595737558, 1.0, 601.6931364881975, 727.4217184860786, 1.0, 647.517353317294, 657.1452114910849, 1.0, 617.715653573595, 808.5377559506178, 1.0, 685.2409959317723, 692.6064296113605, 1.0, 652.0963115766193, 771.0167160125616, 1.0, 663.6259523067589, 747.3996603312406, 1.0, 702.3120638553016, 874.4862340624012, 1.0, 710.6908779426916, 852.4574830292323, 1.0, 739.2129155191075, 964.3966718265997, 1.0, 747.1103543078618, 938.9970366947841, 1.0, 599.8704198987344, 602.8785276918352, 1.0, 552.3922091652273, 546.6956976943728, 1.0, 709.4636602618394, 989.0399643359423, 1.0, 715.2404323227782, 991.9949609795054, 1.0, 753.0218261558828, 976.2911156595661, 1.0, 716.2894300775416, 968.4797456246974, 1.0, 724.9410822047225, 962.1984341095853, 1.0, 759.7872809052475, 953.2814857961421, 1.0], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/Config.toml b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/Config.toml new file mode 100644 index 0000000..1826759 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/Config.toml @@ -0,0 +1,251 @@ +############################################################################### +## PROJECT PARAMETERS ## +############################################################################### + + +# Configure your project parameters here. +# +# IMPORTANT: +# If a parameter is not found here, Pose2Sim will look for its value in the +# Config.toml file of the level above. This way, you can set global +# instructions for the Session and alter them for specific Participants or Trials. +# +# If you wish to overwrite a parameter for a specific trial or participant, +# edit its Config.toml file by uncommenting its key (e.g., [project]) +# and editing its value (e.g., frame_range = [10,300]). Or else, uncomment +# [filtering.butterworth] and set cut_off_frequency = 10, etc. + + + +[project] +multi_person = true # true for trials with multiple participants. If false, only the main person in scene is analyzed. +# frame_rate = 60 # FPS +# frame_range = [] # For example [10,300], or [] for all frames +## N.B.: If you want a time range instead, use frame_range = time_range * frame_rate +## For example if you want to analyze from 0.1 to 2 seconds with a 60 fps frame rate, +## frame_range = [0.1, 2.0]*frame_rate = [6, 120] + +# exclude_from_batch = [] # List of trials to be excluded from batch analysis, ['', 'etc']. +# e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P00_Participant/S00_P00_T01_BalancingTrial'] + + +## Take heart, calibration is not that complicated once you get the hang of it! +# [calibration] +# calibration_type = 'convert' # 'convert' or 'calculate' + + # [calibration.convert] + # convert_from = 'qualisys' # 'qualisys', 'optitrack', vicon', 'opencap', 'easymocap', or 'biocv' + # [calibration.convert.qualisys] + # binning_factor = 1 # Usually 1, except when filming in 540p where it usually is 2 + # [calibration.convert.optitrack] # See readme for instructions + # [calibration.convert.vicon] # No parameter needed + # [calibration.convert.opencap] # No parameter needed + # [calibration.convert.easymocap] # No parameter needed + # [calibration.convert.biocv] # No parameter needed + # [calibration.convert.anipose] # No parameter needed + # [calibration.convert.freemocap] # No parameter needed + + + # [calibration.calculate] + ## Camera properties, theoretically need to be calculated only once in a camera lifetime + # [calibration.calculate.intrinsics] + # overwrite_intrinsics = false # overwrite (or not) if they have already been calculated? + # show_detection_intrinsics = true # true or false (lowercase) + # intrinsics_extension = 'jpg' # any video or image extension + # extract_every_N_sec = 1 # if video, extract frames every N seconds (can be <1 ) + # intrinsics_corners_nb = [4,7] + # intrinsics_square_size = 60 # mm + + ## Camera placements, need to be done before every session + # [calibration.calculate.extrinsics] + # extrinsics_method = 'scene' # 'board', 'scene', 'keypoints' + ## 'board' should be large enough to be detected when laid on the floor. Not recommended. + ## 'scene' involves manually clicking any point of know coordinates on scene. Usually more accurate if points are spread out. + ## 'keypoints' uses automatic pose estimation of a person freely walking and waving arms in the scene. Slighlty less accurate, requires synchronized cameras. + + # moving_cameras = false # Not implemented yet + # calculate_extrinsics = true # true or false (lowercase) + + # [calibration.calculate.extrinsics.board] + # show_reprojection_error = true # true or false (lowercase) + # extrinsics_extension = 'png' # any video or image extension + # extrinsics_corners_nb = [4,7] # [H,W] rather than [w,h] + # extrinsics_square_size = 60 # mm # [h,w] if square is actually a rectangle + + # [calibration.calculate.extrinsics.scene] + # show_reprojection_error = true # true or false (lowercase) + # extrinsics_extension = 'png' # any video or image extension + ## list of 3D coordinates to be manually labelled on images. Can also be a 2 dimensional plane. + ## in m -> unlike for intrinsics, NOT in mm! + # object_coords_3d = [[-2.0, 0.3, 0.0], + # [-2.0 , 0.0, 0.0], + # [-2.0, 0.0, 0.05], + # [-2.0, -0.3 , 0.0], + # [0.0, 0.3, 0.0], + # [0.0, 0.0, 0.0], + # [0.0, 0.0, 0.05], + # [0.0, -0.3, 0.0]] + + # [calibration.calculate.extrinsics.keypoints] + ## Coming soon! + + +# [pose] +# pose_framework = 'openpose' # 'openpose', 'mediapipe', 'alphapose', 'deeplabcut' +# pose_model = 'BODY_25B' #With openpose: BODY_25B, BODY_25, BODY_135, COCO, MPII, +# #With mediapipe: BLAZEPOSE. +# #With alphapose: HALPE_26, HALPE_68, HALPE_136, COCO_133. +# #With deeplabcut: CUSTOM. See example at the end of the file. +## What follows has not been implemented yet +# overwrite_pose = false +# openpose_path = '' # only checked if OpenPose is used + + +# [synchronization] +## COMING SOON! +# reset_sync = true # Recalculate synchronization even if already done +# frames = [2850,3490] # Frames to use for synchronization, should point to a moment with fast motion. +# cut_off_frequency = 10 # cut-off frequency for a 4th order low-pass Butterworth filter +## Vertical speeds (on X, Y, or Z axis, or 2D speeds) +# speed_kind = 'y' # 'x', 'y', 'z', or '2D' +# vmax = 20 # px/s +# cam1_nb = 4 +# cam2_nb = 3 +# id_kpt = [9,10] # Pour plus tard aller chercher numéro depuis keypoint name dans skeleton.py. 'RWrist' BLAZEPOSE 16, BODY_25B 10, BODY_25 4 ; 'LWrist' BLAZEPOSE 15, BODY_25B 9, BODY_25 7 +# weights_kpt = [1,1] # Pris en compte uniquement si on a plusieurs keypoints + + +# [personAssociation] +# tracked_keypoint = 'Neck' # If the neck is not detected by the pose_model, check skeleton.py +## and choose a stable point for tracking the person of interest (e.g., 'right_shoulder' with BLAZEPOSE) +# reproj_error_threshold_association = 20 # px +# likelihood_threshold_association = 0.2 + + +[triangulation] +reorder_trc = true # only checked if multi_person analysis +# reproj_error_threshold_triangulation = 15 # px +# likelihood_threshold_triangulation = 0.3 +# min_cameras_for_triangulation = 2 +# interpolation = 'cubic' #linear, slinear, quadratic, cubic, or none +## 'none' if you don't want to interpolate missing points +# interp_if_gap_smaller_than = 10 # do not interpolate bigger gaps +# show_interp_indices = true # true or false (lowercase). For each keypoint, return the frames that need to be interpolated +# handle_LR_swap = false # Better if few cameras (eg less than 4) with risk of limb swapping (eg camera facing sagittal plane), otherwise slightly less accurate and slower +# undistort_points = false # Better if distorted image (parallel lines curvy on the edge or at least one param > 10^-2), but unnecessary (and slightly slower) if distortions are low +# make_c3d = false # save triangulated data in c3d format in addition to trc # Coming soon! + + +# [filtering] +# type = 'butterworth' # butterworth, kalman, gaussian, LOESS, median, butterworth_on_speed +# display_figures = false # true or false (lowercase) + + # [filtering.butterworth] + # order = 4 + # cut_off_frequency = 6 # Hz + # [filtering.kalman] + ## How much more do you trust triangulation results (measurements), than previous data (process assuming constant acceleration)? + # trust_ratio = 100 # = measurement_trust/process_trust ~= process_noise/measurement_noise + # smooth = true # should be true, unless you need real-time filtering + # [filtering.butterworth_on_speed] + # order = 4 + # cut_off_frequency = 10 # Hz + # [filtering.gaussian] + # sigma_kernel = 2 #px + # [filtering.LOESS] + # nb_values_used = 30 # = fraction of data used * nb frames + # [filtering.median] + # kernel_size = 9 + + +[markerAugmentation] +## Only works on BODY_25 and BODY_25B models +participant_height = [1.21, 1.72] # m # float if single person, list of float if multi-person (same order as the Static trials) +participant_mass = [25.0, 70.0] # kg + + +# [opensim] +# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial'] +# # If this Config.toml file is at the Trial level, set to true or false (lowercase); +# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial']; +# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial'] +# opensim_bin_path = 'C:\OpenSim 4.4\bin' + + +## CUSTOM skeleton, if you trained your own DeepLabCut model for example. +## Make sure the node ids correspond to the column numbers of the 2D pose file, starting from zero. +## +## If you want to perform inverse kinematics, you will also need to create an OpenSim model +## and add to its markerset the location where you expect the triangulated keypoints to be detected. +## +## In this example, CUSTOM reproduces the BODY_25B skeleton (default skeletons are stored in skeletons.py). +## You can create as many custom skeletons as you want, just add them further down and rename them. +## +## Check your model hierarchy with: for pre, _, node in RenderTree(model): +## print(f'{pre}{node.name} id={node.id}') +# [pose.CUSTOM] +# name = "CHip" +# id = "None" +# [[pose.CUSTOM.children]] +# id = 12 +# name = "RHip" +# [[pose.CUSTOM.children.children]] +# id = 14 +# name = "RKnee" +# [[pose.CUSTOM.children.children.children]] +# id = 16 +# name = "RAnkle" +# [[pose.CUSTOM.children.children.children.children]] +# id = 22 +# name = "RBigToe" +# [[pose.CUSTOM.children.children.children.children.children]] +# id = 23 +# name = "RSmallToe" +# [[pose.CUSTOM.children.children.children.children]] +# id = 24 +# name = "RHeel" +# [[pose.CUSTOM.children]] +# id = 11 +# name = "LHip" +# [[pose.CUSTOM.children.children]] +# id = 13 +# name = "LKnee" +# [[pose.CUSTOM.children.children.children]] +# id = 15 +# name = "LAnkle" +# [[pose.CUSTOM.children.children.children.children]] +# id = 19 +# name = "LBigToe" +# [[pose.CUSTOM.children.children.children.children.children]] +# id = 20 +# name = "LSmallToe" +# [[pose.CUSTOM.children.children.children.children]] +# id = 21 +# name = "LHeel" +# [[pose.CUSTOM.children]] +# id = 17 +# name = "Neck" +# [[pose.CUSTOM.children.children]] +# id = 18 +# name = "Head" +# [[pose.CUSTOM.children.children.children]] +# id = 0 +# name = "Nose" +# [[pose.CUSTOM.children.children]] +# id = 6 +# name = "RShoulder" +# [[pose.CUSTOM.children.children.children]] +# id = 8 +# name = "RElbow" +# [[pose.CUSTOM.children.children.children.children]] +# id = 10 +# name = "RWrist" +# [[pose.CUSTOM.children.children]] +# id = 5 +# name = "LShoulder" +# [[pose.CUSTOM.children.children.children]] +# id = 7 +# name = "LElbow" +# [[pose.CUSTOM.children.children.children.children]] +# id = 9 +# name = "LWrist" diff --git a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-3d/S00_P01_T02_Participants1-2_P1_0-100.trc b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-3d/S00_P01_T02_Participants1-2_P1_0-100.trc new file mode 100644 index 0000000..22c810f --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-3d/S00_P01_T02_Participants1-2_P1_0-100.trc @@ -0,0 +1,105 @@ +PathFileType 4 (X/Y/Z) 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-associated/cam04_json/cam04.0062.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-associated/cam04_json/cam04.0062.json new file mode 100644 index 0000000..d4bbba4 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose-associated/cam04_json/cam04.0062.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [900.383044949734, 444.5103036595548, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 978.565130206228, 516.4110274588332, 1.0, 984.8254498723705, 470.7891946084229, 1.0, 987.4444072380439, 647.9171099573849, 1.0, 994.9001063978244, 543.6774514881565, 1.0, 922.8660895619519, 710.4816762383467, 1.0, 941.992996024143, 647.3770062126679, 1.0, 1030.0077848620178, 717.9095987420078, 1.0, 1031.1575770370039, 685.521264853966, 1.0, 916.931068939636, 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a/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose/cam04_json/cam04.0097.json b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose/cam04_json/cam04.0097.json new file mode 100644 index 0000000..37c015d --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose/cam04_json/cam04.0097.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [881.8914926094895, 390.2101221119492, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 960.3612593747862, 460.82938151302517, 1.0, 968.1588381705794, 419.0982966759247, 1.0, 969.4317033234671, 594.321308598467, 1.0, 979.6632624643287, 523.0510301283018, 1.0, 898.6296301124517, 624.1257126247552, 1.0, 895.2013616861044, 606.949758486182, 1.0, 1013.7815168210363, 668.9213215470503, 1.0, 1015.6290647770743, 638.2103575724971, 1.0, 898.4602474850207, 766.5496450281368, 1.0, 924.9466474671378, 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b/Pose2Sim/S00_Demo_Session/S00_P01_MultiParticipants/S00_P01_T02_Participants1-2/pose/cam04_json/cam04.0098.json @@ -0,0 +1 @@ +{"version": 1.3, "people": [{"person_id": [-1], "pose_keypoints_2d": [526.32, 463.167, 0.10118, 0, 0, 0, 521.059, 447.464, 0.134778, 442.156, 452.67, 0.232525, 515.647, 452.725, 0.651862, 389.568, 541.989, 0.642548, 531.496, 531.61, 0.643899, 273.773, 578.912, 0.627654, 647.257, 636.65, 0.69336, 242.33, 536.836, 0.570119, 736.477, 605.018, 0.679027, 452.575, 789.204, 0.623578, 526.335, 773.38, 0.648489, 578.804, 904.73, 0.632241, 636.738, 910.071, 0.655452, 641.924, 1057.31, 0.549846, 678.683, 1078.29, 0.671221, 473.749, 515.635, 0.685183, 494.655, 394.713, 0.661103, 704.974, 1062.58, 0.248964, 694.588, 1062.5, 0.236312, 636.703, 1078.31, 0.401652, 725.949, 1094.02, 0.560058, 715.501, 1109.74, 0.6005, 668.172, 1115.02, 0.643793], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}, {"person_id": [-1], "pose_keypoints_2d": [881.4345935160707, 388.86844439527783, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 959.9112242377298, 459.45529498589826, 1.0, 967.7472574912606, 417.8217939730174, 1.0, 968.9864181945861, 592.9963873738318, 1.0, 979.2645126907981, 522.4365263711009, 1.0, 898.1126733332298, 621.9468470143628, 1.0, 894.1441539944998, 605.7935260294644, 1.0, 1013.3807728937234, 667.7114466364535, 1.0, 1015.2457579298094, 637.0425319361611, 1.0, 898.0037973251785, 765.3138750809735, 1.0, 924.5732282201614, 627.9871441283982, 1.0, 920.642566661459, 717.1412953142797, 1.0, 925.1589664041628, 683.6417276104075, 1.0, 948.4636502493255, 407.1184551042614, 1.0, 881.2138501236545, 317.8666816521661, 1.0, 867.1879818615846, 724.7008941029057, 1.0, 884.3156486967653, 731.6339988956538, 1.0, 934.0536301911343, 699.2229171508656, 1.0, 868.3859905136301, 720.8509949741775, 1.0, 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"pose_keypoints_2d": [531.488, 457.954, 0.11794, 0, 0, 0, 521.081, 447.398, 0.15519, 442.077, 447.501, 0.2059, 515.66, 452.618, 0.649747, 389.543, 536.834, 0.635025, 531.499, 531.553, 0.644739, 268.661, 578.884, 0.621955, 647.198, 636.651, 0.694396, 252.879, 526.231, 0.572361, 736.502, 604.971, 0.678773, 452.671, 789.139, 0.617788, 531.503, 773.322, 0.642861, 578.841, 899.646, 0.612707, 636.742, 910.141, 0.655852, 647.128, 1052.03, 0.497321, 678.734, 1078.33, 0.674372, 478.827, 510.52, 0.674448, 494.658, 389.579, 0.64099, 710.252, 1052.06, 0.271555, 699.786, 1052, 0.255206, 641.878, 1073.06, 0.33751, 720.833, 1094.05, 0.557694, 715.472, 1109.78, 0.596989, 668.225, 1115.02, 0.639284], "face_keypoints_2d": [], "hand_left_keypoints_2d": [], "hand_right_keypoints_2d": [], "pose_keypoints_3d": [], "face_keypoints_3d": [], "hand_left_keypoints_3d": [], "hand_right_keypoints_3d": []}]} \ No newline at end of file diff --git a/Pose2Sim/S00_Demo_Session/test.py b/Pose2Sim/S00_Demo_Session/test.py new file mode 100644 index 0000000..df5b718 --- /dev/null +++ b/Pose2Sim/S00_Demo_Session/test.py @@ -0,0 +1,84 @@ +def test_workflow(): + ''' + Test calibration, + person association, triangulation, filtering, marker augmentation, + for single and multiple person analysis + ''' + + import os + import toml + from Pose2Sim import Pose2Sim + + # CALIBRATION + config_dict = toml.load('Config.toml') + config_dict.get("project").update({"project_dir":"."}) + Pose2Sim.calibration(config_dict) + # edit config_dict for calibration based on keypoints + # Pose2Sim.calibration(config_dict) + + # SINGLE PERSON + # Static trial + project_dir = os.path.join("S00_P00_SingleParticipant","S00_P00_T00_StaticTrial") + config_dict.get("project").update({"project_dir":project_dir}) + # Pose2Sim.poseEstimation(config_dict) + # Pose2Sim.synchronization(config_dict) + Pose2Sim.personAssociation(config_dict) + Pose2Sim.triangulation(config_dict) + Pose2Sim.filtering(config_dict) + Pose2Sim.markerAugmentation(config_dict) + # Pose2Sim.kinematics(config_dict) + + # Balancing trial + project_dir = os.path.join("S00_P00_SingleParticipant","S00_P00_T01_BalancingTrial") + config_dict.get("project").update({"project_dir":project_dir}) + config_dict['filtering']['display_figures'] = False + # Pose2Sim.poseEstimation(config_dict) + # Pose2Sim.synchronization(config_dict) + Pose2Sim.personAssociation(config_dict) + Pose2Sim.triangulation(config_dict) + Pose2Sim.filtering(config_dict) + Pose2Sim.markerAugmentation(config_dict) + # Pose2Sim.kinematics(config_dict) + + + # MULTI PERSON + # Static trial person 1 + project_dir = os.path.join("S00_P01_MultiParticipants","S00_P01_T00_StaticTrialParticipant1") + config_dict.get("project").update({"project_dir":project_dir}) + config_dict.get("markerAugmentation").update({"participant_height":1.21}) + config_dict.get("markerAugmentation").update({"participant_mass":25.0}) + # Pose2Sim.poseEstimation(config_dict) + # Pose2Sim.synchronization(config_dict) + Pose2Sim.personAssociation(config_dict) + Pose2Sim.triangulation(config_dict) + Pose2Sim.filtering(config_dict) + Pose2Sim.markerAugmentation(config_dict) + # Pose2Sim.kinematics(config_dict) + + # Static trial person 2 + project_dir = os.path.join("S00_P01_MultiParticipants","S00_P01_T01_StaticTrialParticipant2") + config_dict.get("project").update({"project_dir":project_dir}) + config_dict.get("markerAugmentation").update({"participant_height":1.72}) + config_dict.get("markerAugmentation").update({"participant_mass":70.0}) + # Pose2Sim.poseEstimation(config_dict) + # Pose2Sim.synchronization(config_dict) + Pose2Sim.personAssociation(config_dict) + Pose2Sim.triangulation(config_dict) + Pose2Sim.filtering(config_dict) + Pose2Sim.markerAugmentation(config_dict) + # Pose2Sim.kinematics(config_dict) + + # Balancing & Yoga trial + project_dir = os.path.join("S00_P01_MultiParticipants","S00_P01_T02_Participants1-2") + config_dict.get("project").update({"project_dir":project_dir}) + config_dict.get("project").update({"multi_person":True}) + config_dict.get("markerAugmentation").update({"participant_height":[1.21, 1.72]}) + config_dict.get("markerAugmentation").update({"participant_mass":[25.0, 70.0]}) + config_dict['triangulation']['reorder_trc'] = False + # Pose2Sim.poseEstimation(config_dict) + # Pose2Sim.synchronization(config_dict) + Pose2Sim.personAssociation(config_dict) + Pose2Sim.triangulation(config_dict) + Pose2Sim.filtering(config_dict) + Pose2Sim.markerAugmentation(config_dict) + # Pose2Sim.kinematics(config_dict) diff --git a/Pose2Sim/Utilities/opensim.log b/Pose2Sim/Utilities/opensim.log new file mode 100644 index 0000000..13fefe7 --- /dev/null +++ b/Pose2Sim/Utilities/opensim.log @@ -0,0 +1,214 @@ +[2024-02-27 17:07:01.556] [info] Loaded model Pose2Sim_scaled-scaled from file D:\softs\github_david\Openpose-to-Opensim\Pose_from_simu_draft\Yoga_multi\Model_Pose2Sim_Body25b_scaled_unlocked_small.osim +[2024-02-27 17:07:01.557] [warning] Couldn't find file 'r_pelvis.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'l_pelvis.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'sacrum.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'femur_r.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'r_patella.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'tibia_r.vtp'. +[2024-02-27 17:07:01.558] [warning] Couldn't find file 'fibula_r.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'talus_rv.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'foot.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'bofoot.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'femur_l.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'l_patella.vtp'. +[2024-02-27 17:07:01.559] [warning] Couldn't find file 'tibia_l.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'fibula_l.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'talus_lv.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'l_foot.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'l_bofoot.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'lumbar5.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'lumbar4.vtp'. +[2024-02-27 17:07:01.560] [warning] Couldn't find file 'lumbar3.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'lumbar2.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'lumbar1.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv1sm.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv2sm.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv3sm.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv4sm.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv5sm.vtp'. +[2024-02-27 17:07:01.561] [warning] Couldn't find file 'cerv6sm.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'cerv7.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic12_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic11_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic10_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic9_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic8_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic7_s.vtp'. +[2024-02-27 17:07:01.562] [warning] Couldn't find file 'thoracic6_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'thoracic5_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'thoracic4_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'thoracic3_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'thoracic2_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'thoracic1_s.vtp'. +[2024-02-27 17:07:01.563] [warning] Couldn't find file 'hat_ribs_scap.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'hat_jaw.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'hat_skull.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'humerus_rv.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'ulna_rv.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'radius_rv.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'pisiform_rvs.vtp'. +[2024-02-27 17:07:01.564] [warning] Couldn't find file 'lunate_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'scaphoid_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'triquetrum_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'hamate_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'capitate_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'trapezoid_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'trapezium_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'metacarpal2_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'index_proximal_rvs.vtp'. +[2024-02-27 17:07:01.565] [warning] Couldn't find file 'index_medial_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'index_distal_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'metacarpal3_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'middle_proximal_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'middle_medial_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'middle_distal_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'metacarpal4_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'ring_proximal_rvs.vtp'. +[2024-02-27 17:07:01.566] [warning] Couldn't find file 'ring_medial_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'ring_distal_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'metacarpal5_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'little_proximal_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'little_medial_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'little_distal_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'metacarpal1_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'thumb_proximal_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'thumb_distal_rvs.vtp'. +[2024-02-27 17:07:01.567] [warning] Couldn't find file 'humerus_lv.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'ulna_lv.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'radius_lv.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'pisiform_lvs.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'lunate_lvs.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'scaphoid_lvs.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'triquetrum_lvs.vtp'. +[2024-02-27 17:07:01.568] [warning] Couldn't find file 'hamate_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'capitate_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'trapezoid_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'trapezium_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'metacarpal2_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'index_proximal_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'index_medial_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'index_distal_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'metacarpal3_lvs.vtp'. +[2024-02-27 17:07:01.569] [warning] Couldn't find file 'middle_proximal_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'middle_medial_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'middle_distal_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'metacarpal4_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'ring_proximal_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'ring_medial_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'ring_distal_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'metacarpal5_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'little_proximal_lvs.vtp'. +[2024-02-27 17:07:01.570] [warning] Couldn't find file 'little_medial_lvs.vtp'. +[2024-02-27 17:07:01.571] [warning] Couldn't find file 'little_distal_lvs.vtp'. +[2024-02-27 17:07:01.571] [warning] Couldn't find file 'metacarpal1_lvs.vtp'. +[2024-02-27 17:07:01.571] [warning] Couldn't find file 'thumb_proximal_lvs.vtp'. +[2024-02-27 17:07:01.571] [warning] Couldn't find file 'thumb_distal_lvs.vtp'. +[2024-02-27 17:07:01.823] [warning] Coordinate.setValue: coordinate pro_sup_r is locked. Unable to change its value. +[2024-02-27 17:07:01.894] [warning] Coordinate.setValue: coordinate pro_sup_l is locked. Unable to change its value. +[2024-02-27 22:25:04.903] [info] Loaded model Pose2Sim_scaled-scaled from file D:\softs\github_david\Openpose-to-Opensim\Pose_from_simu_draft\Yoga_multi\Model_Pose2Sim_Body25b_scaled_unlocked_small.osim +[2024-02-27 22:25:04.904] [warning] Couldn't find file 'r_pelvis.vtp'. +[2024-02-27 22:25:04.904] [warning] Couldn't find file 'l_pelvis.vtp'. +[2024-02-27 22:25:04.905] [warning] Couldn't find file 'sacrum.vtp'. +[2024-02-27 22:25:04.905] [warning] Couldn't find file 'femur_r.vtp'. +[2024-02-27 22:25:04.905] [warning] Couldn't find file 'r_patella.vtp'. +[2024-02-27 22:25:04.905] [warning] Couldn't find file 'tibia_r.vtp'. +[2024-02-27 22:25:04.906] [warning] Couldn't find file 'fibula_r.vtp'. +[2024-02-27 22:25:04.906] [warning] Couldn't find file 'talus_rv.vtp'. +[2024-02-27 22:25:04.906] [warning] Couldn't find file 'foot.vtp'. +[2024-02-27 22:25:04.906] [warning] Couldn't find file 'bofoot.vtp'. +[2024-02-27 22:25:04.907] [warning] Couldn't find file 'femur_l.vtp'. +[2024-02-27 22:25:04.907] [warning] Couldn't find file 'l_patella.vtp'. +[2024-02-27 22:25:04.907] [warning] Couldn't find file 'tibia_l.vtp'. +[2024-02-27 22:25:04.907] [warning] Couldn't find file 'fibula_l.vtp'. +[2024-02-27 22:25:04.908] [warning] Couldn't find file 'talus_lv.vtp'. +[2024-02-27 22:25:04.908] [warning] Couldn't find file 'l_foot.vtp'. +[2024-02-27 22:25:04.908] [warning] Couldn't find file 'l_bofoot.vtp'. +[2024-02-27 22:25:04.908] [warning] Couldn't find file 'lumbar5.vtp'. +[2024-02-27 22:25:04.908] [warning] Couldn't find file 'lumbar4.vtp'. +[2024-02-27 22:25:04.909] [warning] Couldn't find file 'lumbar3.vtp'. +[2024-02-27 22:25:04.909] [warning] Couldn't find file 'lumbar2.vtp'. +[2024-02-27 22:25:04.909] [warning] Couldn't find file 'lumbar1.vtp'. +[2024-02-27 22:25:04.909] [warning] Couldn't find file 'cerv1sm.vtp'. +[2024-02-27 22:25:04.910] [warning] Couldn't find file 'cerv2sm.vtp'. +[2024-02-27 22:25:04.910] [warning] Couldn't find file 'cerv3sm.vtp'. +[2024-02-27 22:25:04.910] [warning] Couldn't find file 'cerv4sm.vtp'. +[2024-02-27 22:25:04.910] [warning] Couldn't find file 'cerv5sm.vtp'. +[2024-02-27 22:25:04.910] [warning] Couldn't find file 'cerv6sm.vtp'. +[2024-02-27 22:25:04.911] [warning] Couldn't find file 'cerv7.vtp'. +[2024-02-27 22:25:04.911] [warning] Couldn't find file 'thoracic12_s.vtp'. +[2024-02-27 22:25:04.911] [warning] Couldn't find file 'thoracic11_s.vtp'. +[2024-02-27 22:25:04.911] [warning] Couldn't find file 'thoracic10_s.vtp'. +[2024-02-27 22:25:04.911] [warning] Couldn't find file 'thoracic9_s.vtp'. +[2024-02-27 22:25:04.912] [warning] Couldn't find file 'thoracic8_s.vtp'. +[2024-02-27 22:25:04.912] [warning] Couldn't find file 'thoracic7_s.vtp'. +[2024-02-27 22:25:04.912] [warning] Couldn't find file 'thoracic6_s.vtp'. +[2024-02-27 22:25:04.912] [warning] Couldn't find file 'thoracic5_s.vtp'. +[2024-02-27 22:25:04.912] [warning] Couldn't find file 'thoracic4_s.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'thoracic3_s.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'thoracic2_s.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'thoracic1_s.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'hat_ribs_scap.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'hat_jaw.vtp'. +[2024-02-27 22:25:04.913] [warning] Couldn't find file 'hat_skull.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'humerus_rv.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'ulna_rv.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'radius_rv.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'pisiform_rvs.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'lunate_rvs.vtp'. +[2024-02-27 22:25:04.914] [warning] Couldn't find file 'scaphoid_rvs.vtp'. +[2024-02-27 22:25:04.915] [warning] Couldn't find file 'triquetrum_rvs.vtp'. +[2024-02-27 22:25:04.915] [warning] Couldn't find file 'hamate_rvs.vtp'. +[2024-02-27 22:25:04.915] [warning] Couldn't find file 'capitate_rvs.vtp'. +[2024-02-27 22:25:04.915] [warning] Couldn't find file 'trapezoid_rvs.vtp'. +[2024-02-27 22:25:04.915] [warning] Couldn't find file 'trapezium_rvs.vtp'. +[2024-02-27 22:25:04.916] [warning] Couldn't find file 'metacarpal2_rvs.vtp'. +[2024-02-27 22:25:04.916] [warning] Couldn't find file 'index_proximal_rvs.vtp'. +[2024-02-27 22:25:04.916] [warning] Couldn't find file 'index_medial_rvs.vtp'. +[2024-02-27 22:25:04.916] [warning] Couldn't find file 'index_distal_rvs.vtp'. +[2024-02-27 22:25:04.916] [warning] Couldn't find file 'metacarpal3_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'middle_proximal_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'middle_medial_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'middle_distal_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'metacarpal4_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'ring_proximal_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'ring_medial_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'ring_distal_rvs.vtp'. +[2024-02-27 22:25:04.917] [warning] Couldn't find file 'metacarpal5_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'little_proximal_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'little_medial_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'little_distal_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'metacarpal1_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'thumb_proximal_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'thumb_distal_rvs.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'humerus_lv.vtp'. +[2024-02-27 22:25:04.918] [warning] Couldn't find file 'ulna_lv.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'radius_lv.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'pisiform_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'lunate_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'scaphoid_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'triquetrum_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'hamate_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'capitate_lvs.vtp'. +[2024-02-27 22:25:04.919] [warning] Couldn't find file 'trapezoid_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'trapezium_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'metacarpal2_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'index_proximal_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'index_medial_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'index_distal_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'metacarpal3_lvs.vtp'. +[2024-02-27 22:25:04.920] [warning] Couldn't find file 'middle_proximal_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'middle_medial_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'middle_distal_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'metacarpal4_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'ring_proximal_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'ring_medial_lvs.vtp'. +[2024-02-27 22:25:04.921] [warning] Couldn't find file 'ring_distal_lvs.vtp'. +[2024-02-27 22:25:04.922] [warning] Couldn't find file 'metacarpal5_lvs.vtp'. +[2024-02-27 22:25:04.922] [warning] Couldn't find file 'little_proximal_lvs.vtp'. +[2024-02-27 22:25:04.922] [warning] Couldn't find file 'little_medial_lvs.vtp'. +[2024-02-27 22:25:04.922] [warning] Couldn't find file 'little_distal_lvs.vtp'. +[2024-02-27 22:25:04.922] [warning] Couldn't find file 'metacarpal1_lvs.vtp'. +[2024-02-27 22:25:04.923] [warning] Couldn't find file 'thumb_proximal_lvs.vtp'. +[2024-02-27 22:25:04.923] [warning] Couldn't find file 'thumb_distal_lvs.vtp'. +[2024-02-27 22:25:05.163] [warning] Coordinate.setValue: coordinate pro_sup_r is locked. Unable to change its value. +[2024-02-27 22:25:05.229] [warning] Coordinate.setValue: coordinate pro_sup_l is locked. Unable to change its value. diff --git a/Pose2Sim/filtering.py b/Pose2Sim/filtering.py index 7a7f8c0..416f583 100644 --- a/Pose2Sim/filtering.py +++ b/Pose2Sim/filtering.py @@ -445,7 +445,6 @@ def filter_all(config): # Read config project_dir = config.get('project').get('project_dir') - single_person = config.get('project').get('single_person') try: pose_tracked_dir = os.path.join(project_dir, 'pose-associated') os.listdir(pose_tracked_dir) diff --git a/Pose2Sim/markerAugmentation.py b/Pose2Sim/markerAugmentation.py index 5ee4f17..f8d8365 100644 --- a/Pose2Sim/markerAugmentation.py +++ b/Pose2Sim/markerAugmentation.py @@ -31,7 +31,6 @@ from Pose2Sim.MarkerAugmenter.utils import TRC2numpy import json import glob import logging -import keras ## AUTHORSHIP INFORMATION @@ -77,7 +76,7 @@ def augmentTRC(config_dict): if not type(subject_height) == list: subject_height = [subject_height] subject_mass = [subject_mass] - augmenterDir = os.path.join(session_dir, '..', '..', 'MarkerAugmenter') + augmenterDir = os.path.join(session_dir, '..', 'MarkerAugmenter') augmenterModelName = 'LSTM' augmenter_model = 'v0.3' offset = True @@ -184,7 +183,7 @@ def augmentTRC(config_dict): model = tf.keras.models.model_from_json(pretrainedModel_json) model.load_weights(os.path.join(augmenterModelDir, "weights.h5")) outputs = model.predict(inputs) - keras.backend.clear_session() + tf.keras.backend.clear_session() # %% Post-process outputs. # Step 1: Reshape if necessary (eg, LSTM) diff --git a/Pose2Sim/personAssociation.py b/Pose2Sim/personAssociation.py index 62be486..91b8491 100644 --- a/Pose2Sim/personAssociation.py +++ b/Pose2Sim/personAssociation.py @@ -11,8 +11,8 @@ Which is the one of interest? This module tries all possible triangulations of a chosen anatomical - point. If "single_person" mode is used, it chooses the person for whom the - reprojection error is smallest. If multi-person is used, it selects all + point. If "multi_person" mode is not used, it chooses the person for + whom the reprojection error is smallest. Otherwise, it selects all persons with a reprojection error smaller than a threshold, and then associates them across time frames by minimizing the displacement speed. @@ -168,9 +168,9 @@ def persons_combinations(json_files_framef): def best_persons_and_cameras_combination(config, json_files_framef, personsIDs_combinations, projection_matrices, tracked_keypoint_id, calib_params): ''' - - if single_person: Choose the right person among the multiple ones found by + - if multi_person: Choose all the combination of cameras that give a reprojection error below a threshold + - else: Chooses the right person among the multiple ones found by OpenPose & excludes cameras with wrong 2d-pose estimation. - - else: Choose all the combination of cameras that give a reprojection error below a threshold 1. triangulate the tracked keypoint for all possible combinations of people, 2. compute difference between reprojection & original openpose detection, @@ -190,7 +190,7 @@ def best_persons_and_cameras_combination(config, json_files_framef, personsIDs_c - comb_errors_below_thresh: list of arrays of ints ''' - single_person = config.get('project').get('single_person') + multi_person = config.get('project').get('multi_person') error_threshold_tracking = config.get('personAssociation').get('reproj_error_threshold_association') likelihood_threshold = config.get('personAssociation').get('likelihood_threshold_association') min_cameras_for_triangulation = config.get('triangulation').get('min_cameras_for_triangulation') @@ -270,23 +270,23 @@ def best_persons_and_cameras_combination(config, json_files_framef, personsIDs_c error_comb_per_cam.append( euclidean_distance(q_file, q_calc) ) error_comb.append( np.mean(error_comb_per_cam) ) - if single_person: + if multi_person: + errors_below_thresh += [e for e in error_comb if e 1: - print(f'\n\nPARTICIPANT {n+1}\n') + logging.info(f'\n\nPARTICIPANT {n+1}\n') for idx, name in enumerate(keypoints_names): mean_error_keypoint_px = np.around(error[n].iloc[:,idx].mean(), decimals=1) # RMS à la place? @@ -559,8 +596,10 @@ def triangulate_all(config): # Read config project_dir = config.get('project').get('project_dir') session_dir = os.path.realpath(os.path.join(project_dir, '..', '..')) + multi_person = config.get('project').get('multi_person') pose_model = config.get('pose').get('pose_model') frame_range = config.get('project').get('frame_range') + reorder_trc = config.get('triangulation').get('reorder_trc') likelihood_threshold = config.get('triangulation').get('likelihood_threshold_triangulation') interpolation_kind = config.get('triangulation').get('interpolation') interp_gap_smaller_than = config.get('triangulation').get('interp_if_gap_smaller_than') @@ -568,7 +607,10 @@ def triangulate_all(config): undistort_points = config.get('triangulation').get('undistort_points') calib_dir = [os.path.join(session_dir, c) for c in os.listdir(session_dir) if ('Calib' or 'calib') in c][0] - calib_file = glob.glob(os.path.join(calib_dir, '*.toml'))[0] # lastly created calibration file + try: + calib_file = glob.glob(os.path.join(calib_dir, '*.toml'))[0] # lastly created calibration file + except: + raise Exception(f'No .toml calibration file found in the {calib_dir}.') pose_dir = os.path.join(project_dir, 'pose') poseTracked_dir = os.path.join(project_dir, 'pose-associated') @@ -722,6 +764,19 @@ def triangulate_all(config): # Create TRC file trc_paths = [make_trc(config, Q_tot[n], keypoints_names, f_range, id_person=n) for n in range(len(Q_tot))] + + # Reorder TRC files + if multi_person and reorder_trc: + trc_id = retrieve_right_trc_order(trc_paths) + [os.rename(t, t+'.old') for t in trc_paths] + [os.rename(t+'.old', trc_paths[i]) for i, t in zip(trc_id,trc_paths)] + error_tot = [error_tot[i] for i in trc_id] + nb_cams_excluded_tot = [nb_cams_excluded_tot[i] for i in trc_id] + cam_excluded_count = [cam_excluded_count[i] for i in trc_id] + interp_frames = [interp_frames[i] for i in trc_id] + non_interp_frames = [non_interp_frames[i] for i in trc_id] + + logging.info('\nThe trc files have been renamed to match the order of the static sequences.') # Recap message recap_triangulate(config, error_tot, nb_cams_excluded_tot, keypoints_names, cam_excluded_count, interp_frames, non_interp_frames, trc_paths) diff --git a/README.md b/README.md index 6a42702..899d7ff 100644 --- a/README.md +++ b/README.md @@ -17,18 +17,18 @@ ##### N.B:. Please set undistort_points and handle_LR_swap to false for now since it currently leads to inaccuracies. I'll try to fix it soon. > **_News_: Version 0.7:**\ -> **Multi-person analysis is now supported!** Team or combat sports can now take advantage of Pose2Sim.\ -> Other recent releases: Automatic batch processing, Marker augmentation, Blender visualizer. +> **Multi-person analysis is now supported!**\ +> Team sports, combat sports, and ballroom dancing can now take advantage of Pose2Sim full potential.\ +> **Other recently added features**: Automatic batch processing, Marker augmentation, Blender visualization. > To upgrade, type `pip install pose2sim --upgrade`. ->
-`Pose2Sim` provides a workflow for 3D markerless kinematics, as an alternative to the more usual marker-based motion capture methods. It aims to provide a free tool to obtain research-grade results from consumer-grade equipment. Any combination of phone, webcam, GoPro, etc can be used. +`Pose2Sim` provides a workflow for 3D markerless kinematics, as an alternative to the more usual marker-based motion capture methods. It aims to provide a free tool to obtain research-grade results from consumer-grade equipment. Any combination of phone, webcam, GoPro, etc. can be used. -Pose2Sim stands for "OpenPose to OpenSim", as it uses OpenPose inputs (2D keypoints coordinates obtained from multiple videos) and leads to an OpenSim result (full-body 3D joint angles). Other 2D pose estimators such as BlazePose, DeeplLabCut, AlphaPose, etc. can now be used as inputs. +Pose2Sim stands for "OpenPose to OpenSim", as it uses OpenPose inputs (2D keypoints coordinates obtained from multiple videos) and leads to an OpenSim result (full-body 3D joint angles). Other 2D pose estimators such as BlazePose (MediaPipe), DeepLabCut, AlphaPose, can now be used as inputs. If you can only use one single camera and don't mind losing some accuracy, please consider using [Sports2D](https://github.com/davidpagnon/Sports2D). @@ -47,9 +47,9 @@ If you can only use one single camera and don't mind losing some accuracy, pleas - [x] v0.4: New calibration tool based on scene measurements - [x] v0.5: Automatic batch processing - [x] v0.6: Marker augmentation, Blender visualizer -- [ ] **v0.7: Multi-person analysis** -- [ ] v0.8: Calibration based on keypoint detection, Handling left/right swaps, Correcting lens distortions +- [x] **v0.7: Multi-person analysis** - [ ] v0.9: New synchronization tool +- [ ] v0.8: Calibration based on keypoint detection, Handling left/right swaps, Correcting lens distortions - [ ] v0.10: Graphical User Interface - [ ] v1.0: First accomplished release @@ -58,16 +58,17 @@ If you can only use one single camera and don't mind losing some accuracy, pleas # Contents 1. [Installation and Demonstration](#installation-and-demonstration) 1. [Installation](#installation) - 2. [Demonstration Part-1: Build 3D TRC file on Python](#demonstration-part-1-build-3d-trc-file-on-python) + 2. [Demonstration Part-1: Triangulate OpenPose outputs](#demonstration-part-1-build-3d-trc-file-on-python) 3. [Demonstration Part-2: Obtain 3D joint angles with OpenSim](#demonstration-part-2-obtain-3d-joint-angles-with-opensim) - 3. [Demonstration Part-3 (optional): Visualize your results with Blender](#demonstration-part-3-optional-visualize-your-results-with-blender) + 4. [Demonstration Part-3 (optional): Visualize your results with Blender](#demonstration-part-3-optional-visualize-your-results-with-blender) + 5. [Demonstration Part-4 (optional): Try multi-person analysis](#demonstration-part-4-optional-try_multi-person-analysis) 2. [Use on your own data](#use-on-your-own-data) 1. [Setting your project up](#setting-your-project-up) 1. [Retrieve the folder structure](#retrieve-the-folder-structure) 2. [Batch processing](#batch-processing) 2. [2D pose estimation](#2d-pose-estimation) 1. [With OpenPose](#with-openpose) - 2. [With Mediapipe](#with-mediapipe) + 2. [With BlazePose (Mediapipe)](#with-blazepose-mediapipe) 3. [With DeepLabCut](#with-deeplabcut) 4. [With AlphaPose](#with-alphapose) 3. [Camera synchronization](#camera-synchronization) @@ -123,8 +124,8 @@ If you don't use Anaconda, type `python -V` in terminal to make sure python>=3.8 > _**This demonstration provides an example experiment of a person balancing on a beam, filmed with 4 calibrated cameras processed with OpenPose.**_ Open a terminal, enter `pip show pose2sim`, report package location. \ -Copy this path and go to the Demo folder with `cd \pose2sim\Demo\S00_Demo_Session`. \ -Type `ipython`, and test the following code: +Copy this path and go to the Single participant Demo folder: `cd \pose2sim\Demo\S00_Demo_Session\S00_P00_SingleParticipant`. \ +Type `ipython`, and try the following code: ``` python from Pose2Sim import Pose2Sim Pose2Sim.calibration() @@ -135,8 +136,8 @@ Pose2Sim.markerAugmentation() ``` 3D results are stored as .trc files in each trial folder in the `pose-3d` directory. -*N.B.:* Default parameters have been provided in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S00_Demo_Session/Config.toml) but can be edited.\ -*N.B.:* *Try calibration tool by changing `calibration_type` to `calculate` instead of `convert` (more info [there](#calculate-from-scratch)).* +*N.B.:* Default parameters have been provided in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) but can be edited.\ +*N.B.:* *Try the calibration tool by changing `calibration_type` to `calculate` instead of `convert` (more info [there](#calculate-from-scratch)).*
@@ -156,6 +157,7 @@ Pose2Sim.markerAugmentation()

+ ## Demonstration Part-3 (optional): Visualize your results with Blender > _**Visualize your results and look in detail for potential areas of improvement (and more).**_ @@ -170,12 +172,36 @@ Visualize camera positions, videos, triangulated keypoints, OpenSim skeleton, an https://github.com/perfanalytics/pose2sim/assets/54667644/5d7c858f-7e46-40c1-928c-571a5679633a +
+ +## Demonstration Part-4 (optional): Try multi-person analysis +> _**Another person, hidden all along, will appear when multi-person analysis is activated!**_ + +Go to the Multi-participant Demo folder: `cd \pose2sim\S00_Demo_Session\S00_P01_MultiParticipants`. \ +Type `ipython`, and try the following code: +``` python +from Pose2Sim import Pose2Sim +Pose2Sim.personAssociation() +Pose2Sim.triangulation() +Pose2Sim.filtering() +Pose2Sim.markerAugmentation() +``` + +One .trc file per participant will be generated and stored in the `pose-3d` directory.\ +You can then run OpenSim scaling and inverse kinematics for each resulting .trc file as in [Demonstration Part-2](#demonstration-part-2-obtain-3d-joint-angles-with-opensim).\ +You can also visualize your results with Blender as in [Demonstration Part-3](#demonstration-part-3-optional-visualize-your-results-with-blender). + +*N.B.:* Set *[project]* `multi_person = true` for each trial that contains multiple persons.\ +Set *[triangulation]* `reorder_trc = true` if you need to run OpenSim and to match the generated .trc files with the static trials.\ +Make sure that the order of *[markerAugmentation]* `participant_height` and `participant_mass` matches the order of the static trials. + +

# Use on your own data > _**Deeper explanations and instructions are given below.**_ \ -> N.B.: If a step is not relevant for your use case (synchronization, person association, etc), you can skip it. +> N.B.: If a step is not relevant for your use case (synchronization, person association, marker augmentation...), you can skip it.
@@ -184,9 +210,9 @@ https://github.com/perfanalytics/pose2sim/assets/54667644/5d7c858f-7e46-40c1-928 ### Retrieve the folder structure 1. Open a terminal, enter `pip show pose2sim`, report package location. \ - Copy this path and go to the Demo folder with `cd \pose2sim\Demo`. - 2. Copy this folder wherever you like, and rename it as you wish. - 3. The rest of the tutorial will explain to you how to populate the `Calibration` and `videos` folders, edit the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) files, and run each Pose2Sim step. + Copy this path and do `cd \pose2sim`. + 2. Copy the `S00_Demo_Session` folder wherever you like, and rename it as you wish. + 3. The rest of the tutorial will explain to you how to populate the `Calibration` and `videos` folders, edit the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) files, and run each Pose2Sim step.
@@ -222,14 +248,14 @@ The accuracy and robustness of Pose2Sim have been thoroughly assessed only with * The [BODY_25B model](https://github.com/CMU-Perceptual-Computing-Lab/openpose_train/tree/master/experimental_models) has more accurate results than the standard BODY_25 one and has been extensively tested for Pose2Sim. \ You can also use the [BODY_135 model](https://github.com/CMU-Perceptual-Computing-Lab/openpose_train/tree/master/experimental_models), which allows for the evaluation of pronation/supination, wrist flexion, and wrist deviation.\ All other OpenPose models (BODY_25, COCO, MPII) are also supported.\ -Make sure you modify the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file accordingly. +Make sure you modify the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file accordingly. * Use one of the `json_display_with_img.py` or `json_display_with_img.py` scripts (see [Utilities](#utilities)) if you want to display 2D pose detections. **N.B.:** *OpenPose BODY_25B is the default 2D pose estimation model used in Pose2Sim. However, other skeleton models from other 2D pose estimation solutions can be used alternatively.* -### With MediaPipe: +### With BlazePose (MediaPipe): [Mediapipe BlazePose](https://google.github.io/mediapipe/solutions/pose.html) is very fast, fully runs under Python, handles upside-down postures and wrist movements (but no subtalar ankle angles). \ However, it is less robust and accurate than OpenPose, and can only detect a single person. * Use the script `Blazepose_runsave.py` (see [Utilities](#utilities)) to run BlazePose under Python, and store the detected coordinates in OpenPose (json) or DeepLabCut (h5 or csv) format: @@ -237,7 +263,7 @@ However, it is less robust and accurate than OpenPose, and can only detect a sin python -m Blazepose_runsave -i input_file -dJs ``` Type in `python -m Blazepose_runsave -h` for explanation on parameters. -* Make sure you changed the `pose_model` and the `tracked_keypoint` in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. +* Make sure you changed the `pose_model` and the `tracked_keypoint` in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. ### With DeepLabCut: If you need to detect specific points on a human being, an animal, or an object, you can also train your own model with [DeepLabCut](https://github.com/DeepLabCut/DeepLabCut). In this case, Pose2Sim is used as an alternative to [AniPose](https://github.com/lambdaloop/anipose), but it may yield better results since 3D reconstruction takes confidence into account (see [this article](https://doi.org/10.1080/21681163.2023.2292067)). @@ -246,7 +272,7 @@ If you need to detect specific points on a human being, an animal, or an object, ``` cmd python -m DLC_to_OpenPose -i input_h5_file ``` -3. Edit `pose.CUSTOM` in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml), and edit the node ids so that they correspond to the column numbers of the 2D pose file, starting from zero. Make sure you also changed the `pose_model` and the `tracked_keypoint`.\ +3. Edit `pose.CUSTOM` in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml), and edit the node IDs so that they correspond to the column numbers of the 2D pose file, starting from zero. Make sure you also changed the `pose_model` and the `tracked_keypoint`.\ You can visualize your skeleton's hierarchy by changing pose_model to CUSTOM and writing these lines: ``` python config_path = r'path_to_Config.toml' @@ -267,7 +293,7 @@ All AlphaPose models are supported (HALPE_26, HALPE_68, HALPE_136, COCO_133, COC ``` cmd python -m AlphaPose_to_OpenPose -i input_alphapose_json_file ``` -* Make sure you changed the `pose_model` and the `tracked_keypoint` in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. +* Make sure you changed the `pose_model` and the `tracked_keypoint` in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file.
@@ -305,23 +331,23 @@ If you already have a calibration file, set `calibration_type` type to `convert` - **From [Qualisys](https://www.qualisys.com):** - Export calibration to `.qca.txt` within QTM. - Copy it in the `Calibration` Pose2Sim folder. - - set `convert_from` to 'qualisys' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. Change `binning_factor` to 2 if you film in 540p. + - set `convert_from` to 'qualisys' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. Change `binning_factor` to 2 if you film in 540p. - **From [Optitrack](https://optitrack.com/):** Exporting calibration will be available in Motive 3.2. In the meantime: - Calculate intrinsics with a board (see next section). - Use their C++ API [to retrieve extrinsic properties](https://docs.optitrack.com/developer-tools/motive-api/motive-api-function-reference#tt_cameraxlocation). Translation can be copied as is in your `Calib.toml` file, but TT_CameraOrientationMatrix first needs to be [converted to a Rodrigues vector](https://docs.opencv.org/3.4/d9/d0c/group__calib3d.html#ga61585db663d9da06b68e70cfbf6a1eac) with OpenCV. See instructions [here](https://github.com/perfanalytics/pose2sim/issues/28). - Use the `Calib.toml` file as is and do not run Pose2Sim.calibration() - **From [Vicon](http://www.vicon.com/Software/Nexus):** - Copy your `.xcp` Vicon calibration file to the Pose2Sim `Calibration` folder. - - set `convert_from` to 'vicon' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. No other setting is needed. + - set `convert_from` to 'vicon' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. No other setting is needed. - **From [OpenCap](https://www.opencap.ai/):** - Copy your `.pickle` OpenCap calibration files to the Pose2Sim `Calibration` folder. - - set `convert_from` to 'opencap' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. No other setting is needed. + - set `convert_from` to 'opencap' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. No other setting is needed. - **From [EasyMocap](https://github.com/zju3dv/EasyMocap/):** - Copy your `intri.yml` and `extri.yml` files to the Pose2Sim `Calibration` folder. - - set `convert_from` to 'easymocap' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. No other setting is needed. + - set `convert_from` to 'easymocap' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. No other setting is needed. - **From [bioCV](https://github.com/camera-mc-dev/.github/blob/main/profile/mocapPipe.md):** - Copy your bioCV calibration files (no extension) to the Pose2Sim `Calibration` folder. - - set `convert_from` to 'biocv' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. No other setting is needed. + - set `convert_from` to 'biocv' in your [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. No other setting is needed. - **From [AniPose](https://github.com/lambdaloop/anipose) or [FreeMocap](https://github.com/freemocap/freemocap):** - Copy your `.toml` calibration file to the Pose2Sim `Calibration` folder. - Calibration can be skipped since Pose2Sim uses the same [Aniposelib](https://anipose.readthedocs.io/en/latest/aniposelibtutorial.html) format. @@ -333,7 +359,7 @@ If you already have a calibration file, set `calibration_type` type to `convert` > _**Calculate calibration parameters with a checkerboard, with measurements on the scene, or automatically with detected keypoints.**_\ > Take heart, it is not that complicated once you get the hang of it! - > *N.B.:* Try the calibration tool on the Demo by changing `calibration_type` to `calculate` in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml).\ + > *N.B.:* Try the calibration tool on the Demo by changing `calibration_type` to `calculate` in [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml).\ For the sake of practicality, there are voluntarily few board images for intrinsic calibration, and few points to click for extrinsic calibration. In spite of this, your reprojection error should be under 1-2 cm, which [does not hinder the quality of kinematic results in practice](https://www.mdpi.com/1424-8220/21/19/6530/htm#:~:text=Angle%20results%20were,Table%203).). - **Calculate intrinsic parameters with a checkerboard:** @@ -343,7 +369,7 @@ If you already have a calibration file, set `calibration_type` type to `convert` - Create a folder for each camera in your `Calibration\intrinsics` folder. - For each camera, film a checkerboard or a charucoboard. Either the board or the camera can be moved. - - Adjust parameters in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. + - Adjust parameters in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. - Make sure that the board: - is filmed from different angles, covers a large part of the video frame, and is in focus. - is flat, without reflections, surrounded by a white border, and is not rotationally invariant (Nrows ≠ Ncols, and Nrows odd if Ncols even). @@ -361,13 +387,13 @@ If you already have a calibration file, set `calibration_type` type to `convert` - Create a folder for each camera in your `Calibration\extrinsics` folder. - Once your cameras are in place, shortly film either a board laid on the floor, or the raw scene\ (only one frame is needed, but do not just take a photo unless you are sure it does not change the image format). - - Adjust parameters in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. + - Adjust parameters in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. - Then, - **With a checkerboard:**\ Make sure that it is seen by all cameras. \ It should preferably be larger than the one used for intrinsics, as results will not be very accurate out of the covered zone. - **With scene measurements** (more flexible and potentially more accurate if points are spread out):\ - Manually measure the 3D coordinates of 10 or more points in the scene (tiles, lines on wall, boxes, treadmill dimensions, etc). These points should be as spread out as possible. Replace `object_coords_3d` by these coordinates in Config.toml.\ + Manually measure the 3D coordinates of 10 or more points in the scene (tiles, lines on wall, boxes, treadmill dimensions...). These points should be as spread out as possible. Replace `object_coords_3d` by these coordinates in Config.toml.\ Then you will click on the corresponding image points for each view. - **With keypoints:**\ For a more automatic calibration, OpenPose keypoints could also be used for calibration.\ @@ -396,7 +422,7 @@ from Pose2Sim import Pose2Sim Pose2Sim.personAssociation() ``` -Check printed output. If results are not satisfying, try and release the constraints in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Demo/S01_Empty_Session/Config.toml) file. +Check printed output. If results are not satisfying, try and release the constraints in the [Config.toml](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/S00_Demo_Session/Config.toml) file. Output:\ @@ -586,7 +612,7 @@ Displays X, Y, Z coordinates of each 3D keypoint of a TRC file in a different ma 
 
 [c3d_to_trc.py](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Utilities/c3d_to_trc.py)
-Converts 3D point data of a .c3d file to a .trc file compatible with OpenSim. No analog data (force plates, emg) nor computed data (angles, powers, etc) are retrieved.
+Converts 3D point data of a .c3d file to a .trc file compatible with OpenSim. No analog data (force plates, emg) nor computed data (angles, powers, etc.) are retrieved.
 
 [trc_desample.py](https://github.com/perfanalytics/pose2sim/blob/main/Pose2Sim/Utilities/trc_desample.py)
 Undersamples a trc file.
@@ -700,7 +726,7 @@ You will be proposed a to-do list, but please feel absolutely free to propose yo
 ▢ **Synchronization:** Synchronize cameras on 2D keypoint speeds. Cf [this draft script](https://github.com/perfanalytics/pose2sim/blob/draft/Pose2Sim/Utilities/synchronize_cams.py).
 
 ✔ **Person Association:** Automatically choose the main person to triangulate.
-▢ **Person Association:** Multiple persons association. 1. Triangulate all the persons whose reprojection error is below a certain threshold (instead of only the one with minimum error), and then track in time with speed cf [Slembrouck 2020](https://link.springer.com/chapter/10.1007/978-3-030-40605-9_15)? or 2. Based on affinity matrices [Dong 2021](https://arxiv.org/pdf/1901.04111.pdf)? or 3. Based on occupancy maps [Yildiz 2012](https://link.springer.com/chapter/10.1007/978-3-642-35749-7_10)? or 4. With a neural network [Huang 2023](https://arxiv.org/pdf/2304.09471.pdf)?
+✔ **Person Association:** Multiple persons association. 1. Triangulate all the persons whose reprojection error is below a certain threshold (instead of only the one with minimum error), and then track in time with speed cf [Slembrouck 2020](https://link.springer.com/chapter/10.1007/978-3-030-40605-9_15)? or 2. Based on affinity matrices [Dong 2021](https://arxiv.org/pdf/1901.04111.pdf)? or 3. Based on occupancy maps [Yildiz 2012](https://link.springer.com/chapter/10.1007/978-3-642-35749-7_10)? or 4. With a neural network [Huang 2023](https://arxiv.org/pdf/2304.09471.pdf)?
 
 ✔ **Triangulation:** Triangulation weighted with confidence.
 ✔ **Triangulation:** Set a likelihood threshold below which a camera should not be used, a reprojection error threshold, and a minimum number of remaining cameras below which triangulation is skipped for this frame. 
@@ -712,8 +738,8 @@ You will be proposed a to-do list, but please feel absolutely free to propose yo
 ✔ **Triangulation:** Solve limb swapping (although not really an issue with Body_25b). Try triangulating with opposite side if reprojection error too large. Alternatively, ignore right and left sides, use RANSAC or SDS triangulation, and then choose right or left by majority voting. More confidence can be given to cameras whose plane is the most coplanar to the right/left line.
 ✔ **Triangulation:** [Undistort](https://docs.opencv.org/3.4/da/d54/group__imgproc__transform.html#ga887960ea1bde84784e7f1710a922b93c) 2D points before triangulating (and [distort](https://github.com/lambdaloop/aniposelib/blob/d03b485c4e178d7cff076e9fe1ac36837db49158/aniposelib/cameras.py#L301) them before computing reprojection error).
 ✔ **Triangulation:** Offer the possibility to augment the triangulated data with [the OpenCap LSTM](https://github.com/stanfordnmbl/opencap-core/blob/main/utilsAugmenter.py). Create "BODY_25_AUGMENTED" model, Scaling_setup, IK_Setup. 
-▢ **Triangulation:** Multiple person kinematics (output multiple .trc coordinates files). Triangulate all persons with reprojection error above threshold, and identify them by minimizing their displacement across frames.
-▢ **Triangulation:** Pre-compile weighted_traingulation and reprojection with @jit(nopython=True, parallel=True) for faster execution.
+✔ **Triangulation:** Multiple person kinematics (output multiple .trc coordinates files). Triangulate all persons with reprojection error above threshold, and identify them by minimizing their displacement across frames.
+▢ **Triangulation:** Pre-compile weighted_triangulation and reprojection with @jit(nopython=True, parallel=True) for faster execution.
 ▢ **Triangulation:** Offer the possibility of triangulating with Sparse Bundle Adjustment (SBA), Extended Kalman Filter (EKF), Full Trajectory Estimation (FTE) (see [AcinoSet](https://github.com/African-Robotics-Unit/AcinoSet)).
 ▢ **Triangulation:** Implement normalized DLT and RANSAC triangulation, Outlier rejection (sliding z-score?), as well as a [triangulation refinement step](https://doi.org/10.1109/TMM.2022.3171102).
 ▢ **Triangulation:** Track hands and face (won't be taken into account in OpenSim at this stage).
@@ -726,7 +752,7 @@ You will be proposed a to-do list, but please feel absolutely free to propose yo
 ✔ **OpenSim:** Optimize model marker positions as compared to ground-truth marker-based positions.
 ✔ **OpenSim:** Add scaling and inverse kinematics setup files.
 ✔ **OpenSim:** Add full model with contact spheres ([SmoothSphereHalfSpaceForce](https://simtk.org/api_docs/opensim/api_docs/classOpenSim_1_1SmoothSphereHalfSpaceForce.html#details)) and full-body muscles ([DeGrooteFregly2016Muscle](https://simtk.org/api_docs/opensim/api_docs/classOpenSim_1_1DeGrooteFregly2016Muscle.html#details)), for [Moco](https://opensim-org.github.io/opensim-moco-site/) for example.
-▢ **OpenSim:** Add model with [ISB shoulder](https://github.com/stanfordnmbl/opencap-core/blob/main/opensimPipeline/Models/LaiUhlrich2022_shoulder.osim).
+✔ **OpenSim:** Add model with [ISB shoulder](https://github.com/stanfordnmbl/opencap-core/blob/main/opensimPipeline/Models/LaiUhlrich2022_shoulder.osim).
 ▢ **OpenSim:** Implement optimal fixed-interval Kalman smoothing for inverse kinematics ([this OpenSim fork](https://github.com/antoinefalisse/opensim-core/blob/kalman_smoother/OpenSim/Tools/InverseKinematicsKSTool.cpp)), or [Biorbd](https://github.com/pyomeca/biorbd/blob/f776fe02e1472aebe94a5c89f0309360b52e2cbc/src/RigidBody/KalmanReconsMarkers.cpp))
 
 ✔ **GUI:** Blender add-on (cf [MPP2SOS](https://blendermarket.com/products/mocap-mpp2soss)), or webapp (e.g., with [Napari](https://napari.org/stable). See my draft project [Maya-Mocap](https://github.com/davidpagnon/Maya-Mocap) and [BlendOsim](https://github.com/JonathanCamargo/BlendOsim).
@@ -752,7 +778,6 @@ You will be proposed a to-do list, but please feel absolutely free to propose yo
 
 ✔ **Bug:** calibration.py. FFMPEG error message when calibration files are images. See [there](https://github.com/perfanalytics/pose2sim/issues/33#:~:text=In%20order%20to%20check,filter%20this%20message%20yet.).
 ▢ **Bug:** common.py, class plotWindow(). Python crashes after a few runs of `Pose2Sim.filtering()` when `display_figures=true`. See [there](https://github.com/superjax/plotWindow/issues/7).
-
diff --git a/setup.cfg b/setup.cfg index 0a86421..f0fef33 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,6 +1,6 @@ [metadata] name = pose2sim -version = 0.6.1 +version = 0.7.0 author = David Pagnon author_email = contact@david-pagnon.com description = Perform a markerless kinematic analysis from multiple calibrated views as a unified workflow from an OpenPose input to an OpenSim result. @@ -51,4 +51,4 @@ install_requires = packages = find_namespace: [options.package_data] -* = OpenSim_Setup/**, MarkerAugmenter/**, Demo/**, Demo/**/.*, Demo/**/**/.*, Demo/**/**/**/.*, Demo/**/**/**/**/.* +* = OpenSim_Setup/**, MarkerAugmenter/**, S00_Demo_Session/**, S00_Demo_Session/**/.*, S00_Demo_Session/**/**/.*, S00_Demo_Session/**/**/**/.*, S00_Demo_Session/**/**/**/**/.*