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davidpagnon 2023-12-17 17:24:09 +01:00
parent f3b0184920
commit dde50b4f83
30 changed files with 480 additions and 236 deletions
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8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Blazepose.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Blazepose_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Blazepose_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>0.016666667 1</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Blazepose.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_blazepose.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -182,7 +182,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Body135.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Body135_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>0.016666666666666601 0.69999999999999996</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body135.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -194,7 +194,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Body25.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Body25_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>2.5166666666666666 4.166666666666667</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK_BODY_25.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -158,7 +158,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK_BODY_25.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

4
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Body25b.xml
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@ -12,7 +12,7 @@
<!--The time range for the study.-->
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_0-100_body25b.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25b.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -158,7 +158,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_0-100.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Coco133.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Coco133_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco133_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>0.016666666666666601 0.69999999999999996</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco133.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -194,7 +194,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Coco18.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_COCO_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_coco_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>2.5166666666666666 4.166666666666667</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK_COCO.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_coco.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -116,7 +116,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK_COCO.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Halpe26.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Halpe26_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_halpe26_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>0.016666666666666601 0.69999999999999996</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe26.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -164,7 +164,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

8
Pose2Sim/Demo/Opensim/IK_Setup_Pose2Sim_Halpe68_136.xml
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@ -4,15 +4,15 @@
<!--Name of the directory where results are written. Be default this is the directory in which the setup file is be executed.-->
<results_directory>./</results_directory>
<!--Name/path to the xml .osim file.-->
<model_file>Model_Pose2Sim_Halpe68_136_scaled.osim</model_file>
<model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</model_file>
<!--The relative weighting of kinematic constraint errors. By default this is Infinity, which means constraints are strictly enforced as part of the optimization and are not appended to the objective (cost) function. Any other non-zero positive scalar is the penalty factor for constraint violations.-->
<constraint_weight>Inf</constraint_weight>
<!--The accuracy of the solution in absolute terms, i.e. the number of significant digits to which the solution can be trusted. Default 1e-5.-->
<accuracy>1.0000000000000001e-05</accuracy>
<!--The time range for the study.-->
<time_range>0.016666666666666601 0.69999999999999996</time_range>
<time_range>0.016666666666666666 1.6666666666666667</time_range>
<!--Name of the resulting inverse kinematics motion (.mot) file.-->
<output_motion_file>Balancing_for_IK.mot</output_motion_file>
<output_motion_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_halpe68_136.mot</output_motion_file>
<!--Flag (true or false) indicating whether or not to report errors from the inverse kinematics solution. Default is true.-->
<report_errors>true</report_errors>
<!--Markers and coordinates to be considered (tasks) and their weightings. The sum of weighted-squared task errors composes the cost function.-->
@ -200,7 +200,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of observations of marker positions obtained during a motion capture experiment. Markers in this file that have a corresponding task and model marker are included.-->
<marker_file>Balancing_for_IK.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc</marker_file>
<!--The name of the storage (.sto or .mot) file containing the time history of coordinate observations. Coordinate values from this file are included if there is a corresponding model coordinate and task. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Flag indicating whether or not to report model marker locations. Note, model marker locations are expressed in Ground.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Blazepose.xml
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@ -458,7 +458,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Blazepose_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_blazepose_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Body135.xml
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@ -589,7 +589,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Body135_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body135_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Body25.xml
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@ -379,7 +379,7 @@
<groups />
</ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>Standing_BODY_25.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 2.5</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -576,7 +576,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>Standing_for_Scaling_BODY_25.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.-->
@ -584,7 +584,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Body25_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Body25_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Body25b.xml
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@ -386,7 +386,7 @@
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.016666666666666666 0.4166666666666667 </time_range>
<time_range> 0.0166663666666666666 0.4166666666666667 </time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
<preserve_mass_distribution>true</preserve_mass_distribution>
<!--Name of OpenSim model file (.osim) to write when done scaling.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Coco133.xml
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@ -589,7 +589,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Body135_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco133_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

6
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Coco18.xml
View File

@ -331,7 +331,7 @@
<groups />
</ScaleSet>
<!--TRC file (.trc) containing the marker positions used for measurement-based scaling. This is usually a static trial, but doesn't need to be. The marker-pair distances are computed for each time step in the TRC file and averaged across the time range.-->
<marker_file>Standing_COCO.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Time range over which to average marker-pair distances in the marker file (.trc) for measurement-based scaling.-->
<time_range> 0.0166667 2.5</time_range>
<!--Flag (true or false) indicating whether or not to preserve relative mass between segments.-->
@ -486,7 +486,7 @@
<groups />
</IKTaskSet>
<!--TRC file (.trc) containing the time history of experimental marker positions (usually a static trial).-->
<marker_file>Standing_for_Scaling_COCO.trc</marker_file>
<marker_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_0-12.trc</marker_file>
<!--Name of file containing the joint angles used to set the initial configuration of the model for the purpose of placing the markers. These coordinate values can also be included in the optimization problem used to place the markers. Before the model markers are placed, a single frame of an inverse kinematics (IK) problem is solved. The IK problem can be solved simply by matching marker positions, but if the model markers are not in the correct locations, the IK solution will not be very good and neither will marker placement. Alternatively, coordinate values (specified in this file) can be specified and used to influence the IK solution. This is valuable particularly if you have high confidence in the coordinate values. For example, you know for the static trial the subject was standing will all joint angles close to zero. If the coordinate set (see the CoordinateSet property) contains non-zero weights for coordinates, the IK solution will try to match not only the marker positions, but also the coordinates in this file. Least-squared error is used to solve the IK problem. -->
<coordinate_file>Unassigned</coordinate_file>
<!--Time range over which the marker positions are averaged.-->
@ -494,7 +494,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_COCO_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Coco_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Halpe26.xml
View File

@ -595,7 +595,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Body135_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe26_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

2
Pose2Sim/Demo/Opensim/Scaling_Setup_Pose2Sim_Halpe68_136.xml
View File

@ -595,7 +595,7 @@
<!--Name of the motion file (.mot) written after marker relocation (optional).-->
<output_motion_file>Unassigned</output_motion_file>
<!--Output OpenSim model file (.osim) after scaling and maker placement.-->
<output_model_file>Model_Pose2Sim_Body135_scaled.osim</output_model_file>
<output_model_file>../S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/Model_Pose2Sim_S00_P00_Halpe68_136_scaled.osim</output_model_file>
<!--Output marker set containing the new marker locations after markers have been placed.-->
<output_marker_file>Unassigned</output_marker_file>
<!--Maximum amount of movement allowed in marker data when averaging frames of the static trial. A negative value means there is not limit.-->

200
Pose2Sim/Demo/Opensim/_ik_marker_errors.sto
View File

@ -5,103 +5,103 @@ nColumns=4
inDegrees=no
endheader
time total_squared_error marker_error_RMS marker_error_max
0.01666667 0.02626894 0.03536809 0.09606109
0.03333333 0.02408808 0.03386814 0.09887503
0.05000000 0.03037267 0.03803048 0.09967242
0.06666667 0.02958102 0.03753159 0.09892524
0.08333333 0.03382587 0.04013422 0.10234188
0.10000000 0.02728017 0.03604241 0.09034376
0.11666667 0.03355254 0.03997174 0.10471012
0.13333333 0.03087641 0.03834456 0.09999765
0.15000000 0.02354861 0.03348675 0.08386681
0.16666667 0.02437696 0.03407063 0.08388989
0.18333333 0.05481722 0.05109152 0.11898579
0.20000000 0.04480196 0.04618903 0.10989205
0.21666667 0.03941520 0.04332337 0.11577461
0.23333333 0.03111698 0.03849365 0.08564433
0.25000000 0.02697549 0.03584058 0.06781596
0.26666667 0.03178701 0.03890587 0.07645628
0.28333333 0.03463109 0.04060911 0.09291625
0.30000000 0.02706018 0.03589679 0.06757480
0.31666667 0.03000868 0.03780191 0.08830495
0.33333333 0.02692392 0.03580630 0.06017895
0.35000000 0.03424561 0.04038246 0.09204803
0.36666667 0.02884694 0.03706297 0.08308400
0.38333333 0.02253925 0.03276122 0.06340748
0.40000000 0.02890170 0.03709813 0.08272302
0.41666667 0.02773521 0.03634177 0.07383371
0.43333333 0.03094102 0.03838465 0.08088307
0.45000000 0.02581885 0.03506378 0.06077550
0.46666667 0.02705192 0.03589132 0.06235354
0.48333333 0.02774752 0.03634984 0.07397116
0.50000000 0.02671459 0.03566684 0.06424466
0.51666667 0.03034164 0.03801105 0.06565019
0.53333333 0.03048768 0.03810242 0.08257123
0.55000000 0.02808867 0.03657261 0.06862692
0.56666667 0.03118737 0.03853716 0.07090958
0.58333333 0.03948562 0.04336205 0.09808614
0.60000000 0.03512564 0.04089804 0.09612911
0.61666667 0.02091877 0.03156156 0.05346082
0.63333333 0.02368997 0.03358711 0.05282269
0.65000000 0.02477984 0.03435102 0.06137312
0.66666667 0.03953488 0.04338909 0.09683613
0.68333333 0.04145006 0.04442761 0.10859716
0.70000000 0.02915344 0.03725935 0.07403998
0.71666667 0.04235119 0.04490794 0.09235750
0.73333333 0.05096796 0.04926506 0.11629286
0.75000000 0.05224576 0.04987878 0.10010413
0.76666667 0.04810159 0.04785971 0.08396103
0.78333333 0.04537130 0.04648159 0.09233021
0.80000000 0.03962913 0.04344078 0.08863775
0.81666667 0.03456841 0.04057234 0.06575329
0.83333333 0.04293350 0.04521562 0.09607413
0.85000000 0.03508934 0.04087690 0.08000502
0.86666667 0.03475991 0.04068456 0.08129855
0.88333333 0.02077652 0.03145407 0.05259404
0.90000000 0.03397333 0.04022160 0.06992867
0.91666667 0.02398417 0.03379502 0.05625258
0.93333333 0.03501967 0.04083630 0.08087699
0.95000000 0.02617041 0.03530170 0.06615376
0.96666667 0.02576602 0.03502789 0.07207688
0.98333333 0.02501692 0.03451496 0.06937809
1.00000000 0.03321790 0.03977191 0.09658010
1.01666667 0.03346932 0.03992214 0.08777548
1.03333333 0.03361445 0.04000860 0.09693677
1.05000000 0.03044210 0.03807393 0.08223316
1.06666667 0.02982425 0.03768557 0.08606672
1.08333333 0.03189024 0.03896900 0.07858539
1.10000000 0.02989574 0.03773071 0.07126806
1.11666667 0.03316462 0.03974000 0.08346108
1.13333333 0.03781131 0.04243276 0.09942507
1.15000000 0.02908447 0.03721525 0.07246685
1.16666667 0.03572171 0.04124359 0.06562003
1.18333333 0.03123642 0.03856745 0.07553710
1.20000000 0.03464327 0.04061625 0.08502353
1.21666667 0.04725342 0.04743588 0.09459261
1.23333333 0.04066721 0.04400607 0.10394148
1.25000000 0.03688755 0.04191121 0.09476451
1.26666667 0.03050295 0.03811196 0.07916299
1.28333333 0.02851446 0.03684876 0.06856615
1.30000000 0.02449921 0.03415595 0.06014496
1.31666667 0.02516585 0.03461754 0.06285175
1.33333333 0.03236121 0.03925570 0.08842938
1.35000000 0.03749222 0.04225333 0.11011629
1.36666667 0.03370968 0.04006523 0.08860643
1.38333333 0.03243301 0.03929923 0.09524879
1.40000000 0.03313512 0.03972232 0.09924957
1.41666667 0.03433526 0.04043528 0.10229625
1.43333333 0.03404295 0.04026280 0.10720158
1.45000000 0.03528732 0.04099205 0.09922929
1.46666667 0.05507035 0.05120935 0.12691460
1.48333333 0.06318595 0.05485303 0.14690148
1.50000000 0.02480501 0.03436846 0.06934722
1.51666667 0.02317554 0.03322043 0.05942233
1.53333333 0.01986112 0.03075333 0.06005001
1.55000000 0.03385000 0.04014853 0.09861442
1.56666667 0.03507511 0.04086861 0.10230740
1.58333333 0.03182181 0.03892717 0.08713251
1.60000000 0.03061292 0.03818060 0.09698427
1.61666667 0.02771060 0.03632564 0.09054431
1.63333333 0.02884248 0.03706010 0.09035046
1.65000000 0.02345962 0.03342342 0.07842644
1.66666667 0.01804090 0.02931024 0.06563896
0.01666667 0.02624129 0.03534947 0.09589647
0.03333333 0.02550051 0.03484695 0.09673502
0.05000000 0.02646963 0.03550294 0.09746151
0.06666667 0.02796268 0.03649050 0.09766497
0.08333333 0.02907182 0.03720716 0.09738092
0.10000000 0.02945062 0.03744877 0.09700262
0.11666667 0.02918492 0.03727946 0.09683547
0.13333333 0.02864795 0.03693492 0.09681546
0.15000000 0.02859513 0.03690085 0.09772378
0.16666667 0.02966865 0.03758714 0.09949684
0.18333333 0.03149107 0.03872434 0.10116239
0.20000000 0.03274891 0.03949015 0.10074148
0.21666667 0.03258718 0.03939252 0.09728576
0.23333333 0.03138635 0.03865990 0.09170491
0.25000000 0.02996713 0.03777574 0.08578469
0.26666667 0.02876902 0.03701288 0.08125883
0.28333333 0.02776380 0.03636050 0.07855304
0.30000000 0.02692636 0.03580792 0.07730425
0.31666667 0.02614355 0.03528358 0.07654350
0.33333333 0.02550347 0.03484897 0.07614644
0.35000000 0.02499100 0.03449707 0.07549088
0.36666667 0.02472294 0.03431155 0.07477292
0.38333333 0.02470954 0.03430225 0.07368627
0.40000000 0.02496992 0.03448252 0.07252078
0.41666667 0.02545987 0.03481917 0.07146381
0.43333333 0.02591238 0.03512724 0.07004798
0.45000000 0.02623918 0.03534805 0.06778799
0.46666667 0.02655738 0.03556173 0.06675899
0.48333333 0.02698934 0.03584978 0.06677129
0.50000000 0.02743782 0.03614641 0.06742114
0.51666667 0.02781968 0.03639707 0.06872025
0.53333333 0.02810611 0.03658396 0.07066584
0.55000000 0.02832555 0.03672650 0.07276696
0.56666667 0.02830232 0.03671144 0.07399600
0.58333333 0.02765154 0.03628691 0.07307571
0.60000000 0.02636549 0.03543303 0.07005075
0.61666667 0.02523235 0.03466324 0.06703200
0.63333333 0.02510591 0.03457629 0.06633144
0.65000000 0.02649074 0.03551709 0.07031651
0.66666667 0.02918853 0.03728177 0.07761350
0.68333333 0.03266772 0.03944117 0.08542577
0.70000000 0.03636627 0.04161402 0.09141493
0.71666667 0.03991942 0.04359960 0.09547830
0.73333333 0.04239957 0.04493358 0.09601358
0.75000000 0.04318887 0.04534990 0.09295758
0.76666667 0.04208475 0.04476646 0.08654408
0.78333333 0.03989854 0.04358819 0.07886787
0.80000000 0.03745609 0.04223297 0.07216250
0.81666667 0.03523903 0.04096400 0.06821441
0.83333333 0.03297048 0.03962351 0.06642399
0.85000000 0.03048082 0.03809813 0.06482683
0.86666667 0.02795569 0.03648593 0.06188115
0.88333333 0.02607066 0.03523436 0.05891320
0.90000000 0.02521896 0.03465405 0.05722728
0.91666667 0.02508389 0.03456112 0.05798439
0.93333333 0.02504621 0.03453515 0.06092449
0.95000000 0.02494340 0.03446420 0.06563753
0.96666667 0.02508036 0.03455869 0.07121076
0.98333333 0.02594247 0.03514763 0.07725405
1.00000000 0.02734954 0.03608821 0.08240327
1.01666667 0.02869983 0.03696835 0.08515390
1.03333333 0.02914406 0.03725335 0.08382124
1.05000000 0.02862142 0.03691781 0.08092755
1.06666667 0.02723475 0.03601240 0.08039238
1.08333333 0.02565316 0.03495110 0.07876373
1.10000000 0.02457654 0.03420982 0.07669788
1.11666667 0.02459505 0.03422270 0.07471315
1.13333333 0.02552799 0.03486572 0.07296305
1.15000000 0.02666182 0.03563160 0.07166202
1.16666667 0.02784570 0.03641409 0.07107153
1.18333333 0.02953602 0.03750303 0.07099025
1.20000000 0.03149212 0.03872499 0.07089562
1.21666667 0.03302002 0.03965327 0.07088048
1.23333333 0.03340052 0.03988108 0.07736230
1.25000000 0.03227037 0.03920057 0.07884005
1.26666667 0.03013324 0.03788029 0.07605078
1.28333333 0.02784388 0.03641290 0.07237448
1.30000000 0.02612870 0.03527356 0.07110871
1.31666667 0.02564628 0.03494641 0.07403086
1.33333333 0.02621977 0.03533497 0.07974700
1.35000000 0.02742527 0.03613814 0.08607984
1.36666667 0.02860716 0.03690861 0.09174530
1.38333333 0.02958702 0.03753539 0.09659259
1.40000000 0.03076876 0.03827766 0.10113479
1.41666667 0.03255846 0.03937516 0.10509337
1.43333333 0.03517295 0.04092557 0.10821711
1.45000000 0.03790609 0.04248590 0.10921706
1.46666667 0.03878841 0.04297752 0.10553909
1.48333333 0.03642693 0.04164872 0.09728608
1.50000000 0.03179529 0.03891094 0.08753283
1.51666667 0.02775602 0.03635540 0.08090716
1.53333333 0.02603420 0.03520971 0.07981847
1.55000000 0.02643422 0.03547918 0.08326708
1.56666667 0.02768399 0.03630820 0.08850356
1.58333333 0.02837614 0.03675928 0.09201960
1.60000000 0.02769009 0.03631220 0.09205417
1.61666667 0.02554506 0.03487738 0.08760451
1.63333333 0.02237326 0.03264037 0.07818405
1.65000000 0.01937228 0.03037252 0.06404174
1.66666667 0.01816983 0.02941479 0.06568657

111
Pose2Sim/Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_OpenSim/S00_P00_T01_BalancingTrial_filt_butterworth_0-100_body25b.mot Normal file
View File

@ -0,0 +1,111 @@
Coordinates
version=1
nRows=100
nColumns=63
inDegrees=yes
Units are S.I. units (second, meters, Newtons, ...)
If the header above contains a line with 'inDegrees', this indicates whether rotational values are in degrees (yes) or radians (no).
endheader
time pelvis_tilt pelvis_list pelvis_rotation pelvis_tx pelvis_ty pelvis_tz hip_flexion_r hip_adduction_r hip_rotation_r knee_angle_r knee_angle_r_beta ankle_angle_r subtalar_angle_r mtp_angle_r hip_flexion_l hip_adduction_l hip_rotation_l knee_angle_l knee_angle_l_beta ankle_angle_l subtalar_angle_l mtp_angle_l L5_S1_Flex_Ext L5_S1_Lat_Bending L5_S1_axial_rotation L4_L5_Flex_Ext L4_L5_Lat_Bending L4_L5_axial_rotation L3_L4_Flex_Ext L3_L4_Lat_Bending L3_L4_axial_rotation L2_L3_Flex_Ext L2_L3_Lat_Bending L2_L3_axial_rotation L1_L2_Flex_Ext L1_L2_Lat_Bending L1_L2_axial_rotation L1_T12_Flex_Ext L1_T12_Lat_Bending L1_T12_axial_rotation Abs_r3 Abs_r2 Abs_r1 Abs_t1 Abs_t2 neck_flexion neck_bending neck_rotation arm_flex_r arm_add_r arm_rot_r elbow_flex_r pro_sup_r wrist_flex_r wrist_dev_r arm_flex_l arm_add_l arm_rot_l elbow_flex_l pro_sup_l wrist_flex_l wrist_dev_l
0.01666667 -0.33315936 4.10223252 -74.27432913 0.03441694 0.95240791 -1.35869863 0.49276232 5.60870043 -35.92777672 20.19465611 0.35246324 19.37084575 -10.98615345 0.00000000 29.96129142 16.20431392 29.27030661 16.51516336 0.28824398 -18.34396882 -18.62203430 0.00000000 -0.02149295 0.42379958 -1.69659312 -0.03991455 0.56365344 -1.80263019 -0.03531076 1.03042630 -1.80263019 -0.02456429 1.03042630 -1.48451898 -0.01995835 0.86421211 -1.37848191 -0.01228107 0.65646555 -1.27244484 -0.15352198 4.79410562 -9.43594194 0.00000000 0.00000000 -10.48983194 4.89742571 -13.54513247 -20.24885899 -20.93048315 -28.92068044 49.68760950 89.99559364 0.00000000 0.00000000 -6.86763388 -23.79114747 20.00730385 24.22499177 89.99559364 0.00000000 0.00000000
0.03333333 -0.90982597 3.18533366 -76.54946292 0.02934133 0.95275285 -1.34895365 -1.14762294 6.90319837 -33.38979163 19.59341776 0.34196965 18.79326426 -10.65865482 0.00000000 29.86309153 14.36311410 24.84654450 19.24330128 0.33585897 -16.52855606 -16.80442187 0.00000000 -0.02443789 0.40225100 -1.81016773 -0.04538360 0.53499383 -1.92330322 -0.04014901 0.97803309 -1.92330322 -0.02793006 0.97803309 -1.58389677 -0.02269302 0.82027024 -1.47076128 -0.01396381 0.62308680 -1.35762580 -0.17455739 4.55034378 -10.06760988 0.00000000 0.00000000 -12.67568586 3.78777676 -8.78058483 -19.09893344 -22.49724053 -25.31202822 51.54662144 89.99559364 0.00000000 0.00000000 -7.33319019 -24.15548613 19.15445345 23.16622658 89.99559364 0.00000000 0.00000000
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Pose2Sim/Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T00_StaticTrial/pose-3d/S00_P00_T00_StaticTrial_filt_butterworth_0-12.trc Normal file
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PathFileType 4 (X/Y/Z) S00_P00_T00_StaticTrial_0-12.trc
DataRate CameraRate NumFrames NumMarkers Units OrigDataRate OrigDataStartFrame OrigNumFrames
60 60 12 21 m 60 0 12
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X1 Y1 Z1 X2 Y2 Z2 X3 Y3 Z3 X4 Y4 Z4 X5 Y5 Z5 X6 Y6 Z6 X7 Y7 Z7 X8 Y8 Z8 X9 Y9 Z9 X10 Y10 Z10 X11 Y11 Z11 X12 Y12 Z12 X13 Y13 Z13 X14 Y14 Z14 X15 Y15 Z15 X16 Y16 Z16 X17 Y17 Z17 X18 Y18 Z18 X19 Y19 Z19 X20 Y20 Z20 X21 Y21 Z21
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5 0.0833333333333333 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531708 0.05652388198749228 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.1170733689369239 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277037 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.22679012550238403 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
6 0.1 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531708 0.05652388198749228 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.11707336893692388 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277037 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.22679012550238403 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
7 0.1166666666666666 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531706 0.056523881987492273 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.11707336893692388 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277035 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.226790125502384 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
8 0.1333333333333333 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531706 0.056523881987492273 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.1170733689369239 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277035 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.226790125502384 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
9 0.15 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531708 0.05652388198749228 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.1170733689369239 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277037 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.22679012550238403 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
10 0.1666666666666666 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531708 0.05652388198749228 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.11707336893692388 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277037 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.22679012550238403 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
11 0.1833333333333333 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531706 0.056523881987492273 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.11707336893692388 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277035 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.226790125502384 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995
12 0.2 -0.08058929090227662 0.8696950332650172 0.07616397712720867 -0.09062396992529695 0.5027125987699388 0.053815664751651685 -0.08348510484278117 0.11873254569531706 0.056523881987492273 0.10932791883931045 0.033444095416829085 0.03574741457702548 0.0724898333571034 0.033062074202217386 0.07875225368890336 -0.11760879369690255 0.047451893916352184 0.04634226265945759 -0.0811948091112187 0.8696061657045608 -0.134932628797828 -0.09131718923675151 0.5024873911329985 -0.12335261295489092 -0.08442033381266921 0.11837364921704989 -0.13744169250106375 0.10857362727170167 0.033095867544029885 -0.1170733689369239 0.0713043071484326 0.032532485878086485 -0.16054431759329554 -0.11848564079149927 0.047124908972131785 -0.1297639541701534 -0.11433658091277035 1.4866114990895252 -0.02344988450662529 -0.037153054478105685 1.7080697552316917 0.0023489874129097 -0.007947310066847896 1.5820735921196263 -0.021655869337684187 -0.12544258694991473 1.406524495743988 0.17755770497265028 -0.08348187441862746 1.1655200498791973 0.30777720913591755 -0.10309240416673054 0.9809612674140525 0.44940349727333967 -0.12592189367116643 1.407115065039762 -0.226790125502384 -0.06355728043185781 1.1690645386299576 -0.3607828888380721 -0.0682346767543675 0.9830199237181223 -0.5087828293513995

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Pose2Sim/Demo/S00_Demo_Session/S00_P00_Participant/S00_P00_T01_BalancingTrial/pose-3d/S00_P00_T01_BalancingTrial_filt_butterworth_0-100.trc Normal file
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PathFileType 4 (X/Y/Z) S00_P00_T01_BalancingTrial_0-100.trc
DataRate CameraRate NumFrames NumMarkers Units OrigDataRate OrigDataStartFrame OrigNumFrames
60 60 100 21 m 60 0 100
Frame# Time RHip RKnee RAnkle RBigToe RSmallToe RHeel LHip LKnee LAnkle LBigToe LSmallToe LHeel Neck Head Nose RShoulder RElbow RWrist LShoulder LElbow LWrist
X1 Y1 Z1 X2 Y2 Z2 X3 Y3 Z3 X4 Y4 Z4 X5 Y5 Z5 X6 Y6 Z6 X7 Y7 Z7 X8 Y8 Z8 X9 Y9 Z9 X10 Y10 Z10 X11 Y11 Z11 X12 Y12 Z12 X13 Y13 Z13 X14 Y14 Z14 X15 Y15 Z15 X16 Y16 Z16 X17 Y17 Z17 X18 Y18 Z18 X19 Y19 Z19 X20 Y20 Z20 X21 Y21 Z21
1 0.0166666666666666 -0.06499776880731577 0.9015132201416932 -1.4005735926016618 -0.03953823544185486 0.4928670195675958 -1.448839828511972 0.043722239677169886 0.14392102600476311 -1.5950232476837725 -0.016930358013220917 0.06443271631692347 -1.4465817927970501 -0.023659406882450416 0.07649613531234171 -1.504955670851614 0.05998555151669328 0.10449043759287752 -1.6357123947955188 0.10412925185379157 0.9087452234460844 -1.458956309830576 0.03046064437340489 0.5362746404904442 -1.2634604115734183 0.013825475610293146 0.18117305106433995 -1.1375271880026123 -0.02223013087295598 0.0953830120230878 -1.0124216532378532 0.0025851125272346336 0.11342035499023559 -0.990095593125439 0.023243410985677126 0.1028104696781683 -1.2269404066275147 -0.028691117162967336 1.4640467742574672 -1.3966877075073407 -0.056374215891602755 1.7024200638322975 -1.2516128899060595 -0.05303771135621414 1.557240859333257 -1.1970460753409875 -0.1674420866482978 1.3929475880159556 -1.4130332081978965 -0.2729544608345023 1.1455669190225908 -1.4797215568705682 -0.3630780653479609 0.9229656892080704 -1.3696481415009016 0.1449346084625674 1.4142103983448606 -1.4453320504539167 0.27704655511782217 1.1648130235864793 -1.4725039614569537 0.35463254276602496 0.9377377304713108 -1.4579500717625873
2 0.0333333333333333 -0.07104221539355533 0.9043857718248949 -1.3935290026984142 -0.038805900576076476 0.49350054440362784 -1.4465460135082697 0.04217122697865273 0.14565147789237595 -1.5952702035359652 -0.017262385969640824 0.06489677662461558 -1.4471475723743115 -0.02345028755342226 0.07552904378809129 -1.503324160367071 0.059097546234150346 0.10738317958349994 -1.6363855978384911 0.10071723690326367 0.9082867353873171 -1.4465696738127234 0.03768271444426348 0.5291465823978586 -1.2425930838408041 0.01121962229843961 0.17260176045855488 -1.1496284034840782 -0.023506949025494873 0.09085042852305744 -1.0128543960363166 -0.0017343510873574436 0.09846739691202129 -1.0095156760413928 0.01997929882811294 0.10451892856857677 -1.217635806244341 -0.023391910591897387 1.4638619184705208 -1.3856850474961646 -0.0439154255529272 1.7026548729321067 -1.251214540499297 -0.03847443176113137 1.5563502491214956 -1.198556437149986 -0.16398493590089236 1.3941321603107173 -1.4213321802361238 -0.2759160080730408 1.1487930488475557 -1.480196205893876 -0.3657281633285029 0.9359377608915419 -1.3600641652438603 0.14974467918964884 1.4100972780266512 -1.4377593851411465 0.2812419795732822 1.160081452984563 -1.4560701338965323 0.3594463665724556 0.9320159286709566 -1.4383584093558017
3 0.05 -0.07645198561087348 0.9069940575482708 -1.3860215927221442 -0.038227439228741375 0.4940966222130925 -1.4441913244044569 0.04056369624500279 0.1473499267457264 -1.5955052910731293 -0.017867244863870847 0.06548552267980098 -1.4470331418421112 -0.023569211114986256 0.07515743354397737 -1.502082608316526 0.05811804871081579 0.11063680953086519 -1.6371707607470438 0.09720199175920109 0.9080798844258202 -1.434618509878132 0.044902962037864425 0.5227327874168545 -1.2224064807806698 0.008571391007693115 0.16532945071881142 -1.1604310273260348 -0.025311324790691793 0.08630322930003084 -1.013103118199981 -0.006238421296751682 0.08592374531436081 -1.0256116295051165 0.01670885248640717 0.10632323927943743 -1.2092765448339104 -0.017674284528190285 1.4637634851026238 -1.3748427241451058 -0.03143945788304643 1.702888000773387 -1.2490642166058659 -0.0257553553470663 1.5557296820248763 -1.198508612163198 -0.16003403293788868 1.3961490903770342 -1.425581797180182 -0.27883793278827673 1.153147979638046 -1.4784308333066012 -0.36904576783022647 0.9489834612139577 -1.3489596196531612 0.15414429522636172 1.4069074383212918 -1.4308213593572152 0.2851207810674118 1.155062224557352 -1.4402949572916393 0.3635767731251191 0.9264522765272559 -1.4192295497769492
4 0.0666666666666666 -0.08094892532689264 0.9091861124521755 -1.377468194814903 -0.0381601656988083 0.4948452671561543 -1.441234779686184 0.03879492924989393 0.14901982475943637 -1.595545465236154 -0.018881909828377067 0.06633042749208148 -1.4458379719028602 -0.024144237348149716 0.0756412317770079 -1.5011868517683955 0.05706870630371764 0.11435847101940755 -1.6381125543681598 0.09349261870507852 0.9080862478436125 -1.4231340468339024 0.051277140359255104 0.5176337434335633 -1.2039577995786597 0.005918700949584895 0.15991981061468694 -1.1692039690213791 -0.027231072425253466 0.08212569818762001 -1.0128943064012912 -0.010404052359622778 0.07722823888358349 -1.0365069303177339 0.013495919915579373 0.10816672049824703 -1.2022530830656484 -0.01119191972260285 1.463813828185207 -1.3641796776284827 -0.01876052426662717 1.7030933248098703 -1.2437223159825277 -0.015783051466802225 1.555665444357744 -1.1950548290626313 -0.15506064269938116 1.3995831233356526 -1.4223134646599132 -0.28138363213027867 1.1596958040057763 -1.4723493709012097 -0.3735805798653687 0.9625872373799477 -1.3353134211805007 0.15808200884511173 1.4050796793839504 -1.424636248866424 0.28837918161502657 1.1496954209767243 -1.425961908056711 0.36642809816266 0.9211729638784384 -1.401036775382437
5 0.0833333333333333 -0.08470151873521656 0.9110495547770567 -1.367480909517751 -0.03894896641974888 0.4961502747897474 -1.4368520197215917 0.03691792745993102 0.15080130153079488 -1.5951031291161535 -0.020170144468770676 0.06745612556398119 -1.4437141664554225 -0.02503019445762778 0.07678232736241634 -1.500339465930817 0.05614280237944806 0.11842494149881613 -1.6391919833708868 0.08958184945738985 0.9080475483985258 -1.411684568137903 0.055354841285950536 0.5141475580229876 -1.1883663741642376 0.0033934473132109996 0.15633707429250063 -1.1753679885848811 -0.028649065099440988 0.07878718081333173 -1.0119670239906784 -0.013497949423146659 0.07248460554607657 -1.0420646396604276 0.010553408056287435 0.11004588519680049 -1.1962153616573565 -0.003790019429250878 1.464013021130426 -1.3535789823238118 -0.00569697560721974 1.7032529297409906 -1.2346767255592301 -0.008006670846950496 1.5562640871524764 -1.186963764082489 -0.14878038473734667 1.4045049379022188 -1.4104861891999847 -0.28325025182594626 1.168791101487968 -1.4614300447040782 -0.37938690672629377 0.9773437232374698 -1.3189227211304684 0.16200912508988088 1.404409698951597 -1.4183926306247607 0.2908076337307041 1.1442538746968962 -1.4136003231564116 0.36777743007203745 0.9162071448560821 -1.383962655672738
6 0.1 -0.08810515478109146 0.9128997693016946 -1.3560727876162544 -0.04102364059676942 0.49857989792743934 -1.429808622170096 0.0351921856007892 0.15296791102944726 -1.5940072159332872 -0.02138511803604224 0.06871831205429015 -1.4412958924988089 -0.02593309624978893 0.0781540595882253 -1.4994014052654077 0.05552809579940724 0.1227816673509911 -1.6403352315602997 0.08556212554777833 0.9077657586194066 -1.3995873471919988 0.05601342361413436 0.5119959348035746 -1.1759813320846202 0.001190662033507884 0.1542991522011091 -1.178630413123191 -0.029898169928074612 0.0762849253155347 -1.0103373891842766 -0.01520495490475662 0.07109005353284108 -1.0431058095878734 0.008219007568097127 0.1122223639257979 -1.1905855175025126 0.0045589127422791835 1.4643184333496837 -1.3428888780013988 0.007745672468595218 1.7033361094681323 -1.2227596748538672 -0.0007889499867376452 1.557320095164916 -1.1744200983780981 -0.14130075179981252 1.4103992235151253 -1.3926313081634158 -0.2846033475061154 1.17976198384707 -1.4474618793776577 -0.3858318046126758 0.9937582970410607 -1.3001904793680463 0.16677659880148613 1.4040893790768803 -1.4103073178833734 0.29252682017327325 1.1390974599944508 -1.403024338672029 0.3679474985371112 0.9113334128977028 -1.3677978444864718
7 0.1166666666666666 -0.09148949719783074 0.9150605803002246 -1.3436322672639034 -0.04506123854212721 0.5026266704531391 -1.418545796856697 0.03377363804611967 0.15576977942481474 -1.5923536424293854 -0.02224292170365014 0.06990110270720257 -1.4392546002206923 -0.026614953802447588 0.07940759164725049 -1.4985206571813947 0.05518094092891565 0.12753930626385632 -1.6413338978410155 0.081546226357615 0.9072166355434922 -1.3863859678263675 0.05303985545055154 0.5104380830939488 -1.166199408290691 -0.0005108844402248486 0.15343805965052992 -1.1794619095601078 -0.03187252470777266 0.07424943954774091 -1.0082459477860977 -0.015554500695349803 0.07248235709386942 -1.0406122542155787 0.0067473043638740775 0.11496380282035001 -1.1853058777939616 0.013796937132589273 1.464693974332061 -1.3320821637927454 0.02145594381147727 1.7032287790647165 -1.2096545098796678 0.007537839951050856 1.5584350194251257 -1.158831979293666 -0.13303723368987716 1.416448453967284 -1.3732840839395395 -0.28583393836468646 1.191591772075791 -1.432879442282582 -0.39187677601067916 1.012170377475351 -1.279875419712732 0.1732118253047748 1.4030326714397212 -1.3986203039858092 0.2940507554290211 1.1343730557091114 -1.3935212141267137 0.36764282395828085 0.9060552467772033 -1.3524131374651023
8 0.1333333333333333 -0.09499939536551538 0.9175971344590588 -1.3308069811211491 -0.051922744611347604 0.5085355561724304 -1.401395703592028 0.032348396768070026 0.15932352323788282 -1.5903235635448407 -0.022742858250401995 0.0708345818149079 -1.4378743573039552 -0.02699681500826892 0.08037315824456641 -1.49793431780833 0.054831323148440456 0.13274863277870555 -1.6415621814665844 0.07744347841673717 0.9064821143471855 -1.3723243167937762 0.046943816987826806 0.5088146754851912 -1.1581335711100949 -0.0016390140603991406 0.15342964172541504 -1.178775609358991 -0.03472947529121204 0.07263152866314007 -1.0058838495902003 -0.0146423001720311 0.07635130700133445 -1.0352053083802457 0.006102625562696817 0.11809639315790903 -1.1811227535999949 0.023739781296445463 1.4651211919627483 -1.3212425030017396 0.0355859832410173 1.7027158127128525 -1.1967707784985027 0.017953393485655618 1.5592155280641733 -1.1421133752293486 -0.12460997812656376 1.4219254611821461 -1.3563351722172996 -0.287214996914606 1.2037502579161392 -1.4189220643481304 -0.3966979035712594 1.032792592619491 -1.258884667239795 0.1814249996717535 1.4004574244601986 -1.3832367568294672 0.2960343887697618 1.1299482273354136 -1.3842747536172482 0.36759877433815735 0.8997165274707448 -1.3379647785574198
9 0.15 -0.09857750917585226 0.9202327411674395 -1.3183147852718105 -0.06226521521642865 0.5161483936039275 -1.3772537519928088 0.03016874906418586 0.16359239957385002 -1.58784632808046 -0.023148847209485297 0.07145696931836532 -1.4369441959439593 -0.027169562409963585 0.08107136515057431 -1.497613595709524 0.05411006490483608 0.13829440900129275 -1.6399492646155869 0.07288836509202935 0.9057064484128329 -1.3584207418139878 0.03858555590093553 0.5070335155784254 -1.1512040663659446 -0.0022433190381962714 0.15405524760057773 -1.1773495590866003 -0.03752890231222313 0.07191283751376737 -1.0034211002638012 -0.012596804930980336 0.08237174853713711 -1.027230877284735 0.006016924177279882 0.12108827026708331 -1.1789227781595808 0.034164120256227594 1.4655737185903615 -1.3103626274829694 0.050578473064726126 1.7016072390286403 -1.1846865872023948 0.030658016870716454 1.5593981902145795 -1.1260328987753918 -0.11664751504931781 1.4263817665501657 -1.3437465608524488 -0.28888874613749854 1.216204328569703 -1.405772999537781 -0.4002537440245552 1.0559288108510203 -1.237878338451434 0.19043282061771666 1.3962840509138867 -1.366260643193573 0.2989727383963946 1.125466636289083 -1.3745635582926858 0.3683027978966646 0.8918152160606754 -1.3242810378856038
10 0.1666666666666666 -0.10204764769434609 0.9225561839068854 -1.3066732679615554 -0.07588707519058273 0.5243182736393817 -1.347316897796487 0.02645300848891586 0.16844388950576464 -1.5845339442203084 -0.023826320412501944 0.07187022708383614 -1.4359421636257041 -0.027396589865805832 0.08170693349342968 -1.497079910919289 0.05246077192922586 0.14437629135467595 -1.6355880902192546 0.06767511582044387 0.9049861672041326 -1.3457701268902347 0.0291087358035665 0.5056904088475026 -1.1452031666012192 -0.002425170434724559 0.15518733905027424 -1.175620053614425 -0.03878808625965977 0.07262615633167564 -1.0011946298746146 -0.009702652612027471 0.08968901669676003 -1.017651831081372 0.00622498417677048 0.12350700416725854 -1.17907761052222 0.04500976340679286 1.4659608048062656 -1.2991938518170496 0.06666290122168826 1.6999192663542797 -1.173381340388293 0.04530537413050509 1.5588579463267156 -1.1118693979815497 -0.10945114482669002 1.4296999591516903 -1.3353450744979396 -0.2908510469183052 1.2290396802363142 -1.3933500774910357 -0.4033722958300397 1.0820171627679507 -1.2170628809384354 0.1987305060965167 1.3909663420665126 -1.3505247104920572 0.303037305422192 1.1204147489593446 -1.363798207263816 0.3699035608519509 0.8823964965046848 -1.310372750882796
11 0.1833333333333333 -0.10535707800882135 0.9243339027043136 -1.2960870538462042 -0.09118849111362157 0.5304184792519384 -1.3165203289531142 0.020710460176959825 0.1738099733411116 -1.5798865372868678 -0.02510732071280492 0.07238177870993204 -1.4343116095063524 -0.02811165284501997 0.08260795997163464 -1.4955625709231353 0.04912839083691688 0.15186084061770533 -1.628168330462395 0.062093065906149436 0.9042225996360822 -1.3347265851937269 0.019935177893422477 0.5056958175073892 -1.1398802266309411 -0.0022903167001567986 0.15672996022250507 -1.1737090836064443 -0.037216175059653835 0.0749448041020027 -0.9996926748905268 -0.006453879031285151 0.0965299695064573 -1.0087598520940095 0.006571865286737321 0.1251962253173975 -1.181441568350157 0.056326590169813964 1.4660593355601412 -1.2874398245555994 0.08350383173510587 1.6978731462653376 -1.1623600869466149 0.06124637173083444 1.557494867835591 -1.1004344846742247 -0.10278484978830152 1.4320467888431436 -1.3291372015143739 -0.29285871718880263 1.242330652606402 -1.381454642220159 -0.4070652937872308 1.1111694213111436 -1.1966792990791617 0.2054223251639423 1.3849628242985983 -1.337558801381961 0.3080468640518558 1.1142818473439087 -1.3515426668881183 0.3721710168637861 0.8721088314795163 -1.2949180412746781
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2
Pose2Sim/Demo/S01_Empty_Session/Config.toml
View File

@ -152,7 +152,7 @@ display_figures = false # true or false (lowercase)
[opensim]
static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
static_trial = ['S01_P00_Participant0/S01_P00_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant0/Config.toml
View File

@ -153,7 +153,7 @@
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P00_Participant0/S01_P00_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant0/S01_P00_T00_StaticTrial/Config.toml
View File

@ -153,7 +153,7 @@
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P00_Participant0/S01_P00_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant0/S01_P00_T01_MotionTrial1/Config.toml
View File

@ -153,7 +153,7 @@ display_figures = true # true or false (lowercase)
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P00_Participant/0S01_P00_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P00_Participant0/S01_P00_T02_MotionTrial2/Config.toml
View File

@ -153,7 +153,7 @@ display_figures = true # true or false (lowercase)
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P00_Participant0/S01_P00_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant1/Config.toml
View File

@ -153,7 +153,7 @@
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P01_Participant1/S01_P01_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant1/S01_P01_T00_StaticTrial/Config.toml
View File

@ -153,7 +153,7 @@
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P01_Participant1/S01_P01_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant1/S01_P01_T01_MotionTrial1/Config.toml
View File

@ -153,7 +153,7 @@ display_figures = true # true or false (lowercase)
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P01_Participant1/S01_P01_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

2
Pose2Sim/Demo/S01_Empty_Session/S01_P01_Participant1/S01_P01_T02_MotionTrial2/Config.toml
View File

@ -153,7 +153,7 @@ display_figures = true # true or false (lowercase)
# [opensim]
# static_trial = ['S00_P00_Participant/S00_P00_T00_StaticTrial']
# static_trial = ['S01_P01_Participant1/S01_P01_T00_StaticTrial']
# # If this Config.toml file is at the Trial level, set to true or false (lowercase);
# # At the Participant level, specify the name of the static trial folder name, e.g. ['S00_P00_T00_StaticTrial'];
# # At the Session level, add participant subdirectory, e.g. ['S00_P00_Participant/S00_P00_T00_StaticTrial', 'S00_P01_Participant/S00_P00_T00_StaticTrial']

181
Pose2Sim/Pose2Sim.py
View File

@ -217,24 +217,36 @@ def poseEstimation(config=None):
raise NotImplementedError('This has not been integrated yet. \nPlease read README.md for further explanation')
# TODO
from Pose2Sim.poseEstimation import pose_estimation_all
# Determine the level at which the function is called (session:3, participant:2, trial:1)
level, config_dicts = read_config_files(config)
if type(config)==dict:
config_dict = config
else:
config_dict = read_config_files(config)
project_dir, seq_name, frames = base_params(config_dict)
config_dict = config_dicts[0]
if config_dict.get('project').get('project_dir') == None:
raise ValueError('Please specify the project directory in config_dict:\n \
config_dict.get("project").update({"project_dir":"<YOUR_TRIAL_DIRECTORY>"})')
# Set up logging
session_dir = os.path.realpath(os.path.join(config_dicts[0].get('project').get('project_dir'), '..', '..'))
setup_logging(session_dir)
# Batch process all trials
for config_dict in config_dicts:
start = time.time()
project_dir = os.path.realpath(config_dict.get('project').get('project_dir'))
seq_name = os.path.basename(project_dir)
frame_range = config_dict.get('project').get('frame_range')
frames = ["all frames" if frame_range == [] else f"frames {frame_range[0]} to {frame_range[1]}"][0]
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Camera synchronization")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Pose estimation")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
start = time.time()
pose_estimation_all(config_dict)
end = time.time()
logging.info(f'Pose estimation took {end-start:.2f} s.')
pose_estimation_all(config_dict)
end = time.time()
logging.info(f'Pose estimation took {end-start:.2f} s.')
def synchronization(config=None):
@ -249,24 +261,36 @@ def synchronization(config=None):
raise NotImplementedError('This has not been integrated yet. \nPlease read README.md for further explanation')
#TODO
from Pose2Sim.synchronization import synchronize_cams_all
# Determine the level at which the function is called (session:3, participant:2, trial:1)
level, config_dicts = read_config_files(config)
if type(config)==dict:
config_dict = config
else:
config_dict = read_config_files(config)
project_dir, seq_name, frames = base_params(config_dict)
config_dict = config_dicts[0]
if config_dict.get('project').get('project_dir') == None:
raise ValueError('Please specify the project directory in config_dict:\n \
config_dict.get("project").update({"project_dir":"<YOUR_TRIAL_DIRECTORY>"})')
# Set up logging
session_dir = os.path.realpath(os.path.join(config_dicts[0].get('project').get('project_dir'), '..', '..'))
setup_logging(session_dir)
# Batch process all trials
for config_dict in config_dicts:
start = time.time()
project_dir = os.path.realpath(config_dict.get('project').get('project_dir'))
seq_name = os.path.basename(project_dir)
frame_range = config_dict.get('project').get('frame_range')
frames = ["all frames" if frame_range == [] else f"frames {frame_range[0]} to {frame_range[1]}"][0]
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Camera synchronization")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
synchronize_cams_all(config_dict)
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Camera synchronization")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
start = time.time()
synchronize_cams_all(config_dict)
end = time.time()
logging.info(f'Synchronization took {end-start:.2f} s.')
end = time.time()
logging.info(f'Synchronization took {end-start:.2f} s.')
def personAssociation(config=None):
@ -295,8 +319,8 @@ def personAssociation(config=None):
setup_logging(session_dir)
# Batch process all trials
start = time.time()
for config_dict in config_dicts:
start = time.time()
project_dir = os.path.realpath(config_dict.get('project').get('project_dir'))
seq_name = os.path.basename(project_dir)
frame_range = config_dict.get('project').get('frame_range')
@ -309,8 +333,8 @@ def personAssociation(config=None):
track_2d_all(config_dict)
end = time.time()
logging.info(f'Associating persons took {end-start:.2f} s.')
end = time.time()
logging.info(f'Associating persons took {end-start:.2f} s.')
def triangulation(config=None):
@ -338,8 +362,8 @@ def triangulation(config=None):
setup_logging(session_dir)
# Batch process all trials
start = time.time()
for config_dict in config_dicts:
start = time.time()
project_dir = os.path.realpath(config_dict.get('project').get('project_dir'))
seq_name = os.path.basename(project_dir)
frame_range = config_dict.get('project').get('frame_range')
@ -399,9 +423,10 @@ def filtering(config=None):
filter_all(config_dict)
def scalingModel(config=None):
def opensimProcessing(config=None):
'''
Uses OpenSim to scale a model based on a static 3D pose.
Uses OpenSim to run scaling based on a static trc pose
and inverse kinematics based on a trc motion file.
config can be a dictionary,
or a the directory path of a trial, participant, or session,
@ -411,53 +436,39 @@ def scalingModel(config=None):
raise NotImplementedError('This has not been integrated yet. \nPlease read README.md for further explanation')
# TODO
from Pose2Sim.scalingModel import scale_model_all
from Pose2Sim.opensimProcessing import opensim_processing_all
# Determine the level at which the function is called (session:3, participant:2, trial:1)
level, config_dicts = read_config_files(config)
if type(config)==dict:
config_dict = config
else:
config_dict = read_config_files(config)
project_dir, seq_name, frames = base_params(config_dict)
config_dict = config_dicts[0]
if config_dict.get('project').get('project_dir') == None:
raise ValueError('Please specify the project directory in config_dict:\n \
config_dict.get("project").update({"project_dir":"<YOUR_TRIAL_DIRECTORY>"})')
# Set up logging
session_dir = os.path.realpath(os.path.join(config_dicts[0].get('project').get('project_dir'), '..', '..'))
setup_logging(session_dir)
# Batch process all trials
for config_dict in config_dicts:
start = time.time()
project_dir = os.path.realpath(config_dict.get('project').get('project_dir'))
seq_name = os.path.basename(project_dir)
frame_range = config_dict.get('project').get('frame_range')
frames = ["all frames" if frame_range == [] else f"frames {frame_range[0]} to {frame_range[1]}"][0]
logging.info("\n\n---------------------------------------------------------------------")
# if static_file in project_dir:
# logging.info(f"Scaling model with <STATIC TRC FILE>.")
# else:
# logging.info(f"Running inverse kinematics <MOTION TRC FILE>.")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nOpenSim output directory: {project_dir}")
opensim_processing_all(config_dict)
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Scaling model")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
start = time.time()
scale_model_all(config_dict)
end = time.time()
logging.info(f'Model scaling took {end-start:.2f} s.')
def inverseKinematics(config=None):
'''
Uses OpenSim to perform inverse kinematics.
config can be a dictionary,
or a the directory path of a trial, participant, or session,
or the function can be called without an argument, in which case it the config directory is the current one.
'''
raise NotImplementedError('This has not been integrated yet. \nPlease read README.md for further explanation')
# TODO
from Pose2Sim.inverseKinematics import inverse_kinematics_all
if type(config)==dict:
config_dict = config
else:
config_dict = read_config_files(config)
project_dir, seq_name, frames = base_params(config_dict)
logging.info("\n\n---------------------------------------------------------------------")
logging.info("Inverse kinematics")
logging.info("---------------------------------------------------------------------")
logging.info(f"\nProject directory: {project_dir}")
start = time.time()
inverse_kinematics_all(config_dict)
end = time.time()
logging.info(f'Inverse kinematics took {end-start:.2f} s.')
end = time.time()
logging.info(f'Model scaling took {end-start:.2f} s.')