84 lines
2.6 KiB
Python
84 lines
2.6 KiB
Python
#!/usr/bin/env python
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# -*- coding: utf-8 -*-
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'''
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##################################################
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## Convert trc Z-up files to Y-up files ##
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##################################################
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Convert trc files with Z-up system coordinates to Y-up files.
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Usage:
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from Pose2Sim.Utilities import trc_Zup_to_Yup; trc_Zup_to_Yup.trc_Zup_to_Yup_func(r'<input_trc_file>', r'<output_trc_file>')
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python -m trc_Zup_to_Yup -i "<input_trc_file>"
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python -m trc_Zup_to_Yup -i "<input_trc_file>" -o "<output_trc_file>"
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'''
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## INIT
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import pandas as pd
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import numpy as np
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import argparse
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## AUTHORSHIP INFORMATION
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__author__ = "David Pagnon"
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__copyright__ = "Copyright 2021, Pose2Sim"
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__credits__ = ["David Pagnon"]
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__license__ = "BSD 3-Clause License"
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__version__ = '0.4'
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__maintainer__ = "David Pagnon"
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__email__ = "contact@david-pagnon.com"
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__status__ = "Development"
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## FUNCTIONS
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def trc_Zup_to_Yup_func(*args):
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'''
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Turns trc files with Z-up system coordinates into Y-up files.
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Usage:
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import trc_Zup_to_Yup; trc_Zup_to_Yup.trc_Zup_to_Yup_func(r'<input_trc_file>', r'<output_trc_file>')
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trcZup_to_Yup -i "<input_trc_file>"
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trcZup_to_Yup -i "<input_trc_file>" -o "<output_trc_file>"
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'''
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try:
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trc_path = args[0]['input'] # invoked with argparse
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if args[0]['output'] == None:
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trc_yup_path = trc_path.replace('.trc', '_Yup.trc')
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else:
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trc_yup_path = args[0]['output']
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except:
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trc_path = args[0] # invoked as a function
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trc_yup_path = trc_path.replace('.trc', '_Yup.trc')
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# header
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with open(trc_path, 'r') as trc_file:
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header = [next(trc_file) for line in range(5)]
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# data
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trc_df = pd.read_csv(trc_path, sep="\t", skiprows=4)
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frames_col, time_col = trc_df.iloc[:,0], trc_df.iloc[:,1]
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Q_coord = trc_df.drop(trc_df.columns[[0, 1]], axis=1)
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# X->Y, Y->Z, Z->X
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cols = list(Q_coord.columns)
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cols = np.array([[cols[i*3+1],cols[i*3+2],cols[i*3]] for i in range(int(len(cols)/3))]).flatten()
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Q_Yup = Q_coord[cols]
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# write file
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with open(trc_yup_path, 'w') as trc_o:
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[trc_o.write(line) for line in header]
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Q_Yup.insert(0, 'Frame#', frames_col)
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Q_Yup.insert(1, 'Time', time_col)
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Q_Yup.to_csv(trc_o, sep='\t', index=False, header=None, line_terminator='\n')
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if __name__ == '__main__':
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parser = argparse.ArgumentParser()
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parser.add_argument('-i', '--input', required = True, help='trc Zup input file')
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parser.add_argument('-o', '--output', required=False, help='trc Yup output file')
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args = vars(parser.parse_args())
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trc_Zup_to_Yup_func(args) |